Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   VUK78_RS13590 Genome accession   NZ_CP150467
Coordinates   626369..626887 (+) Length   172 a.a.
NCBI ID   WP_005448429.1    Uniprot ID   A0A9X3RVD3
Organism   Vibrio harveyi strain NH-LM1     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 621369..631887
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VUK78_RS13580 (VUK78_13580) gshA 624089..625657 (+) 1569 WP_340700207.1 glutamate--cysteine ligase -
  VUK78_RS13585 (VUK78_13585) - 625677..626282 (+) 606 WP_029790340.1 hypothetical protein -
  VUK78_RS13590 (VUK78_13590) luxS 626369..626887 (+) 519 WP_005448429.1 S-ribosylhomocysteine lyase Regulator
  VUK78_RS13595 (VUK78_13595) - 626980..628254 (-) 1275 WP_005446238.1 CNNM domain-containing protein -
  VUK78_RS13600 (VUK78_13600) - 628409..629203 (-) 795 WP_005446240.1 inner membrane protein YpjD -
  VUK78_RS13605 (VUK78_13605) ffh 629417..630799 (+) 1383 WP_005446242.1 signal recognition particle protein -
  VUK78_RS13610 (VUK78_13610) rpsP 631010..631258 (+) 249 WP_004410028.1 30S ribosomal protein S16 -
  VUK78_RS13615 (VUK78_13615) rimM 631287..631835 (+) 549 WP_005446245.1 ribosome maturation factor RimM -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19054.80 Da        Isoelectric Point: 4.8563

>NTDB_id=970415 VUK78_RS13590 WP_005448429.1 626369..626887(+) (luxS) [Vibrio harveyi strain NH-LM1]
MPLLDSFTVDHTRMHAPAVRVAKTMQTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGFMRNHLNGDSVEIIDISP
MGCRTGFYMSLIGTPSEQQVADAWVAAMEDVLKVESQNKIPELNEYQCGTAAMHSLDEAKQIAKNILEAGVAVNKNDDLA
LPESMLKELRID

Nucleotide


Download         Length: 519 bp        

>NTDB_id=970415 VUK78_RS13590 WP_005448429.1 626369..626887(+) (luxS) [Vibrio harveyi strain NH-LM1]
ATGCCTTTATTAGACAGTTTTACCGTAGACCACACACGTATGCATGCGCCAGCAGTTCGTGTGGCTAAAACGATGCAAAC
TCCAAAGGGAGACACCATCACAGTATTTGACTTACGTTTTACTGCACCGAACAAAGACATCCTTTCTGAGAAGGGAATTC
ACACTTTAGAGCATTTGTACGCTGGCTTTATGCGCAACCACTTAAACGGTGATAGCGTTGAGATCATCGATATCTCACCA
ATGGGTTGCCGTACCGGTTTTTACATGAGCTTGATTGGTACGCCTTCAGAGCAGCAAGTGGCGGATGCTTGGGTTGCAGC
AATGGAAGACGTATTGAAAGTAGAAAGTCAAAACAAGATCCCTGAGCTGAATGAATACCAATGTGGTACAGCTGCAATGC
ACTCTTTAGATGAGGCAAAGCAAATCGCGAAAAACATTCTAGAAGCGGGCGTTGCAGTCAATAAGAATGATGATTTGGCA
CTGCCAGAATCTATGCTGAAAGAGTTACGTATCGACTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

85.965

99.419

0.855

Multiple sequence alignment