Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsA   Type   Regulator
Locus tag   VUK78_RS09055 Genome accession   NZ_CP150466
Coordinates   2003859..2005040 (-) Length   393 a.a.
NCBI ID   WP_026000191.1    Uniprot ID   A0A1E3E250
Organism   Vibrio harveyi strain NH-LM1     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1998859..2010040
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VUK78_RS09040 (VUK78_09040) - 2000153..2000701 (+) 549 WP_005447141.1 GNAT family N-acetyltransferase -
  VUK78_RS09045 (VUK78_09045) - 2000776..2001393 (-) 618 WP_050940222.1 HAD family phosphatase -
  VUK78_RS09050 (VUK78_09050) - 2001680..2003725 (+) 2046 WP_069688167.1 hybrid sensor histidine kinase/response regulator -
  VUK78_RS09055 (VUK78_09055) cqsA 2003859..2005040 (-) 1182 WP_026000191.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  VUK78_RS09060 (VUK78_09060) ylqF 2005574..2006518 (-) 945 WP_005447133.1 ribosome biogenesis GTPase YlqF -
  VUK78_RS09065 (VUK78_09065) - 2006840..2007826 (-) 987 WP_340699355.1 peptidoglycan DD-metalloendopeptidase family protein -

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 43694.80 Da        Isoelectric Point: 6.4464

>NTDB_id=970398 VUK78_RS09055 WP_026000191.1 2003859..2005040(-) (cqsA) [Vibrio harveyi strain NH-LM1]
MSDKLKTKPLPSFVEERLDFYIQDLIEQNENQKHLVLGKRPQSGAVVMQSNDYLSLSHNQLIQKAHRDAITEHDDNVVMS
AIFLQDDTSKPAFETQLADYVGMGSCLLSQSGWAANIGLLQTICPPNTPVYIDFFAHMSLWEGIRAAGAHAHAFMHNNMN
HLRKQIQRHGSGVIVVDSVYSTIGTIAPLHDIYEMAREFDCALVVDESHSLGTHGPNGAGLVKALGLTDQVDFITVSLAK
TFAYRAGAILGPEKLAKTLPFVAYPAIFSSTVLPQEVIRLEKTLEVIKGADDKRTLLFNRAKELRTGLKQIGFNIRSESQ
IVALECGSERNTERVRDFLEERNVFGAVFCRPATGKNKNIIRFSINADMTSRDVDHVLTACQEAFNHPELEFA

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=970398 VUK78_RS09055 WP_026000191.1 2003859..2005040(-) (cqsA) [Vibrio harveyi strain NH-LM1]
ATGAGTGATAAACTGAAAACGAAACCTCTTCCTTCTTTTGTTGAGGAACGCCTAGACTTTTATATTCAAGACTTGATCGA
ACAAAACGAGAACCAGAAGCACTTGGTTTTGGGTAAGCGACCACAATCCGGAGCGGTGGTCATGCAAAGCAACGACTACT
TATCGTTATCCCACAACCAACTGATTCAAAAGGCACATCGTGATGCAATTACCGAGCATGACGACAACGTAGTAATGTCT
GCAATCTTCCTGCAAGATGATACTTCCAAGCCTGCATTTGAAACCCAACTCGCCGATTACGTGGGAATGGGAAGCTGCTT
GCTCTCACAATCAGGATGGGCGGCAAACATCGGGTTGTTGCAAACGATTTGCCCACCAAATACGCCCGTCTATATCGACT
TTTTTGCGCATATGTCGTTATGGGAAGGTATTCGAGCAGCGGGAGCACACGCGCATGCATTTATGCACAACAATATGAAC
CACTTGCGTAAACAGATCCAACGTCATGGCTCCGGTGTGATTGTTGTCGATTCGGTCTATAGCACGATTGGTACTATCGC
CCCACTTCACGACATCTACGAAATGGCACGTGAATTTGATTGTGCATTGGTCGTCGATGAATCCCACTCACTTGGAACTC
ACGGTCCAAATGGCGCTGGTCTTGTGAAAGCGTTAGGGTTAACCGATCAAGTTGATTTCATTACGGTAAGTTTGGCTAAG
ACATTCGCATACCGTGCGGGGGCTATTCTTGGTCCTGAGAAGCTGGCTAAGACACTCCCATTTGTCGCGTATCCAGCGAT
TTTTAGTTCGACGGTGTTGCCACAAGAAGTGATTCGCTTAGAAAAAACGCTTGAGGTGATTAAGGGGGCTGACGATAAAC
GAACCTTACTGTTCAACCGAGCTAAAGAGCTAAGAACAGGATTAAAACAAATTGGCTTTAATATCCGTAGTGAATCTCAA
ATTGTCGCTTTGGAGTGCGGTAGCGAGAGAAATACGGAACGTGTACGTGACTTTCTTGAAGAACGTAATGTGTTTGGTGC
AGTATTCTGTCGCCCAGCAACAGGTAAGAACAAAAACATCATCCGATTTTCAATCAATGCAGATATGACTTCTCGCGATG
TGGACCACGTACTTACCGCTTGTCAGGAAGCATTTAACCATCCAGAACTAGAATTCGCATAA

Domains

Predicted by InterproScan.

Aminotransferase class I and II (Aminotran_1_2)

(47-379)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1E3E250

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsA Vibrio cholerae strain A1552

57.623

98.473

0.567

Multiple sequence alignment