Detailed information    

insolico Bioinformatically predicted

Overview


Name   rok   Type   Regulator
Locus tag   ACLF6N_RS08285 Genome accession   NZ_CP177279
Coordinates   1542450..1543025 (+) Length   191 a.a.
NCBI ID   WP_003232378.1    Uniprot ID   O34857
Organism   Bacillus subtilis strain KFRI-P74     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context


Location: 1537450..1548025
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLF6N_RS08255 (ACLF6N_08255) dapD 1537638..1538348 (+) 711 WP_003218680.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase -
  ACLF6N_RS08260 (ACLF6N_08260) dapI 1538418..1539542 (+) 1125 WP_014476668.1 N-acetyldiaminopimelate deacetylase -
  ACLF6N_RS08265 (ACLF6N_08265) ykuS 1539604..1539849 (+) 246 WP_003232382.1 YkuS family protein -
  ACLF6N_RS08270 (ACLF6N_08270) mscT 1539886..1540689 (-) 804 WP_003244994.1 small-conductance mechanosensitive channel protein MscT -
  ACLF6N_RS08275 (ACLF6N_08275) ahpA 1540926..1541468 (+) 543 WP_003245371.1 biofilm-specific peroxidase AhpA -
  ACLF6N_RS08280 (ACLF6N_08280) ykuV 1541538..1541984 (+) 447 WP_014479665.1 thiol-disulfide oxidoreductase YkuV -
  ACLF6N_RS08285 (ACLF6N_08285) rok 1542450..1543025 (+) 576 WP_003232378.1 transcriptional regulator Rok Regulator
  ACLF6N_RS08295 (ACLF6N_08295) cse15 1544356..1545321 (-) 966 WP_014479669.1 spore protein Cse15 -
  ACLF6N_RS08300 (ACLF6N_08300) mobA 1545458..1546057 (+) 600 WP_014479670.1 molybdenum cofactor guanylyltransferase -
  ACLF6N_RS08305 (ACLF6N_08305) moeB 1546108..1547127 (+) 1020 WP_014479671.1 molybdopterin-synthase adenylyltransferase MoeB -

Sequence


Protein


Download         Length: 191 a.a.        Molecular weight: 21839.85 Da        Isoelectric Point: 9.8633

>NTDB_id=970259 ACLF6N_RS08285 WP_003232378.1 1542450..1543025(+) (rok) [Bacillus subtilis strain KFRI-P74]
MFNEREALRLRLEQLNEAEVKVIREYQIERDKIYAKLRELDRNGSPSEIKKDFRSEKKPDSLPVLAELAAQEIRSYQPQS
QQQSVQPQLQSISSLPAGIPDGTTRRRRGTARPGSKAAKLREAAIKTLKRHNAAIKSSELQKEIEKESGLEIPNMTTFMQ
SLIKMYPEVKKPYRGQYILEGEIESAESANE

Nucleotide


Download         Length: 576 bp        

>NTDB_id=970259 ACLF6N_RS08285 WP_003232378.1 1542450..1543025(+) (rok) [Bacillus subtilis strain KFRI-P74]
ATGTTTAATGAAAGAGAAGCTTTGCGCTTGCGGTTAGAACAATTAAATGAAGCTGAAGTGAAAGTCATTCGTGAATATCA
AATTGAACGTGATAAAATATACGCAAAATTAAGAGAGCTGGACAGAAATGGAAGCCCTTCCGAAATCAAAAAGGATTTCC
GTTCTGAAAAAAAACCTGACTCTCTGCCGGTTCTCGCTGAGCTTGCGGCTCAGGAAATCAGAAGCTATCAGCCGCAATCA
CAGCAGCAGTCTGTTCAGCCTCAGCTTCAATCTATTTCCTCTCTTCCTGCCGGTATACCAGACGGAACAACACGAAGAAG
AAGAGGAACGGCAAGACCGGGATCAAAAGCAGCTAAGCTGCGTGAAGCTGCTATTAAAACATTAAAACGCCACAACGCGG
CGATTAAGAGCTCGGAGCTTCAAAAAGAGATTGAAAAAGAAAGCGGTCTTGAAATCCCTAATATGACAACATTTATGCAA
AGCTTAATTAAAATGTACCCGGAAGTGAAAAAGCCATATCGCGGGCAGTACATTTTAGAGGGTGAAATCGAATCTGCAGA
ATCAGCAAATGAATAA

Domains



No domain identified.



Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  PDB 5ZUX
  PDB 5ZUZ

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

100

100

1


Multiple sequence alignment