Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   ACLF6N_RS07245 Genome accession   NZ_CP177279
Coordinates   1358769..1359905 (+) Length   378 a.a.
NCBI ID   WP_015252291.1    Uniprot ID   -
Organism   Bacillus subtilis strain KFRI-P74     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 1353769..1364905
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLF6N_RS07225 (ACLF6N_07225) yjnA 1354188..1354952 (-) 765 WP_014476525.1 sulfite exporter TauE/SafE family protein -
  ACLF6N_RS07230 (ACLF6N_07230) - 1355261..1356613 (-) 1353 WP_014478984.1 IS1182 family transposase -
  ACLF6N_RS07235 (ACLF6N_07235) bstD 1356752..1357204 (-) 453 WP_412052563.1 DinB family protein -
  ACLF6N_RS07240 (ACLF6N_07240) yjoB 1357353..1358624 (+) 1272 WP_003245490.1 ATPase YjoB -
  ACLF6N_RS07245 (ACLF6N_07245) rapC 1358769..1359905 (+) 1137 WP_015252291.1 response regulator aspartate phosphatase RapA Regulator
  ACLF6N_RS07250 (ACLF6N_07250) phrA 1359895..1360029 (+) 135 WP_003245487.1 phosphatase RapA inhibitor PhrA -
  ACLF6N_RS07255 (ACLF6N_07255) yjpA 1360060..1360306 (-) 247 Protein_1366 YciI family protein -
  ACLF6N_RS07260 (ACLF6N_07260) xlyB 1360427..1361380 (+) 954 WP_014479545.1 N-acetylmuramoyl-L-alanine amidase -
  ACLF6N_RS07265 (ACLF6N_07265) yjqA 1361420..1361797 (-) 378 WP_014479546.1 PH domain-containing protein -
  ACLF6N_RS07270 (ACLF6N_07270) pghB 1361902..1362504 (+) 603 WP_014479547.1 poly-gamma-glutamate hydrolase family protein -
  ACLF6N_RS07275 (ACLF6N_07275) xpdC 1362581..1363417 (+) 837 WP_003245071.1 manganese catalase family protein -
  ACLF6N_RS07280 (ACLF6N_07280) xkdA 1363461..1364057 (-) 597 WP_003232721.1 ImmA/IrrE family metallo-endopeptidase -
  ACLF6N_RS07285 (ACLF6N_07285) xre 1364220..1364561 (-) 342 WP_003232719.1 HTH-type transcriptional regulator Xre -

Sequence

Protein


Download         Length: 378 a.a.        Molecular weight: 45046.23 Da        Isoelectric Point: 4.7218

>NTDB_id=970251 ACLF6N_RS07245 WP_015252291.1 1358769..1359905(+) (rapC) [Bacillus subtilis strain KFRI-P74]
MRMKQTIPSSYVGLKINEWYTHIRQFHVAEAERVKLEVEREIEDMEEDQDLLLYYSLMEFRHRVMLDYIKPFGEDTSQLE
FSELLEDIEGNQYKLTGLLEYYFNFFRGMYEFKQKMFVSAMMYYKRAEKNLALVSDDIEKAEFAFKMAEIFYNLKQTYVS
MSYAVQALETYQMYETYTVRRIQCEFVIAGNYDDMQYPERALPHLELALDLAKKEGNPRLISSALYNLGNCYEKMGELQK
AAEYFEKSVSICKSEKFDNLPHSIYSLTQVLYKQKNDAEAQKKYREGLEIARQYSDELFVELFQFLHALYGKNIDTESVS
HTFQFLEEHMLYPYIEELAHDAAQFYIENGQPEKALSFYEKMVHAQKQIQRGDCLYEI

Nucleotide


Download         Length: 1137 bp        

>NTDB_id=970251 ACLF6N_RS07245 WP_015252291.1 1358769..1359905(+) (rapC) [Bacillus subtilis strain KFRI-P74]
TTGAGGATGAAGCAGACGATTCCGTCCTCTTATGTCGGGCTTAAAATTAATGAATGGTATACTCATATCCGGCAGTTCCA
CGTCGCTGAAGCCGAACGGGTCAAGCTCGAAGTAGAAAGAGAAATTGAGGATATGGAAGAAGACCAAGATTTGCTGCTGT
ATTATTCTTTAATGGAGTTCAGGCATCGTGTCATGCTGGATTACATTAAGCCTTTTGGAGAGGACACGTCGCAGCTAGAG
TTTTCAGAATTATTAGAAGACATCGAAGGGAATCAGTACAAGCTGACAGGGCTTCTCGAATATTACTTTAATTTTTTTCG
AGGAATGTATGAATTTAAGCAGAAGATGTTTGTCAGTGCCATGATGTATTATAAACGGGCAGAAAAGAATCTTGCCCTCG
TCTCGGATGATATTGAGAAAGCCGAGTTTGCTTTTAAAATGGCTGAGATTTTTTACAATTTAAAACAAACCTATGTTTCG
ATGAGCTACGCCGTTCAGGCATTAGAAACATACCAAATGTATGAAACGTACACCGTCCGCAGAATCCAATGTGAATTCGT
TATTGCAGGTAATTATGATGATATGCAGTATCCAGAAAGAGCATTGCCCCACTTAGAACTGGCTTTAGATCTTGCAAAGA
AGGAAGGCAATCCCCGCCTGATCAGTTCCGCCCTATATAATCTCGGAAACTGCTATGAGAAAATGGGTGAACTGCAAAAG
GCAGCCGAATACTTTGAGAAATCTGTTTCTATTTGCAAGTCGGAAAAGTTCGATAATCTTCCGCATTCTATCTACTCTTT
AACACAAGTTCTGTATAAACAAAAAAATGACGCCGAAGCGCAAAAAAAGTATCGTGAAGGATTGGAAATCGCCCGTCAAT
ACAGTGATGAATTATTCGTGGAGCTTTTTCAATTTTTACATGCGTTATACGGAAAAAACATTGACACAGAATCGGTCTCA
CACACCTTTCAATTTCTTGAAGAACATATGCTGTATCCTTATATTGAAGAGCTGGCGCATGATGCTGCCCAATTCTATAT
AGAAAACGGACAGCCCGAAAAAGCACTTTCATTTTATGAGAAAATGGTGCACGCACAAAAACAAATCCAGAGAGGAGATT
GTTTATATGAAATCTAA

Domains

Predicted by InterProScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(6-67)

Tetratricopeptide repeat (TPR_12)

(221-293)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

44.947

99.471

0.447
  rapF Bacillus subtilis subsp. subtilis str. 168

41.689

100

0.418