Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   ACLF6N_RS04660 Genome accession   NZ_CP177279
Coordinates   878994..879710 (+) Length   238 a.a.
NCBI ID   WP_258996546.1    Uniprot ID   -
Organism   Bacillus subtilis strain KFRI-P74     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 873994..884710
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLF6N_RS04630 (ACLF6N_04630) - 874496..874633 (+) 138 WP_072592513.1 hypothetical protein -
  ACLF6N_RS04635 (ACLF6N_04635) yflB 874652..875044 (+) 393 WP_003233692.1 DUF1992 domain-containing protein -
  ACLF6N_RS04640 (ACLF6N_04640) - 875169..875373 (+) 205 Protein_864 sodium:alanine symporter family protein -
  ACLF6N_RS04645 (ACLF6N_04645) - 875369..875698 (-) 330 Protein_865 spore germination protein -
  ACLF6N_RS04650 (ACLF6N_04650) treP 875805..877217 (+) 1413 WP_014479163.1 PTS system trehalose-specific EIIBC component -
  ACLF6N_RS04655 (ACLF6N_04655) treC 877288..878973 (+) 1686 WP_324271357.1 alpha,alpha-phosphotrehalase -
  ACLF6N_RS04660 (ACLF6N_04660) treR 878994..879710 (+) 717 WP_258996546.1 trehalose operon repressor Regulator
  ACLF6N_RS04665 (ACLF6N_04665) hypO 879850..880515 (+) 666 WP_014476144.1 NAD(P)H-dependent oxidoreductase -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27869.87 Da        Isoelectric Point: 7.5090

>NTDB_id=970226 ACLF6N_RS04660 WP_258996546.1 878994..879710(+) (treR) [Bacillus subtilis strain KFRI-P74]
MKVNKFITIYKDIAQQIEGGRWKAEEILPSEHELTAQYGTSRETVRKALHMLAQNGYIQKIRGKGSVVLNREKMQFPVSG
LVSFKELARTLGKETKTTVHKFGLEPPSELIQKQLRANLDDDIWEVIRSRKIDGEHVILDKDYFFRKHVPHLTKEICENS
IYEYIEGELGLSISYAQKEIVAEPCTDEDRELLDLRGYDHMVVVRNYVFLEDTSLFQYTESRHRLDKFRFVDFARRGK

Nucleotide


Download         Length: 717 bp        

>NTDB_id=970226 ACLF6N_RS04660 WP_258996546.1 878994..879710(+) (treR) [Bacillus subtilis strain KFRI-P74]
ATGAAGGTGAATAAATTCATCACAATTTATAAAGACATCGCACAGCAAATTGAAGGCGGCCGATGGAAAGCGGAGGAGAT
TCTTCCGTCTGAACATGAGTTGACCGCACAGTACGGTACATCAAGAGAAACGGTCCGAAAGGCGCTTCATATGCTCGCGC
AAAACGGTTATATCCAGAAAATCAGGGGAAAAGGCTCCGTCGTGCTCAATCGTGAAAAAATGCAGTTTCCCGTTTCGGGC
CTTGTCAGCTTCAAGGAGCTCGCGCGAACGCTTGGCAAAGAAACGAAAACAACTGTACACAAATTCGGGCTGGAGCCTCC
GTCAGAGCTGATCCAAAAACAGCTCCGGGCCAATCTGGATGACGACATCTGGGAAGTCATCAGGTCTAGAAAGATTGACG
GGGAACATGTGATTTTGGACAAGGATTACTTTTTCAGAAAGCATGTCCCTCACCTGACGAAAGAAATTTGTGAAAACTCC
ATATATGAATATATAGAAGGAGAGCTCGGTCTTTCGATCAGTTACGCCCAAAAAGAAATTGTCGCCGAGCCGTGTACGGA
CGAGGACAGAGAGCTGCTCGATTTACGCGGCTATGACCATATGGTCGTGGTGAGAAACTACGTCTTTTTGGAGGATACCA
GTTTGTTTCAATATACGGAAAGCAGACACCGTCTCGACAAATTCCGATTTGTTGATTTTGCGCGGCGGGGGAAATGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, gntR family (GntR)

(8-68)

UTRA domain (UTRA)

(91-229)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

42.308

98.319

0.416