Detailed information    

insolico Bioinformatically predicted

Overview

Name   lrpC   Type   Machinery gene
Locus tag   ACLF6N_RS02425 Genome accession   NZ_CP177279
Coordinates   477918..478352 (+) Length   144 a.a.
NCBI ID   WP_003246585.1    Uniprot ID   A0ABU0V5G7
Organism   Bacillus subtilis strain KFRI-P74     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 472918..483352
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLF6N_RS02395 (ACLF6N_02395) ydaD 473564..474424 (+) 861 WP_003246648.1 SDR family oxidoreductase -
  ACLF6N_RS02400 (ACLF6N_02400) lyxE 474440..474943 (+) 504 WP_088272170.1 D-lyxose ketol-isomerase -
  ACLF6N_RS02405 (ACLF6N_02405) ydaF 475032..475583 (+) 552 WP_014478866.1 GNAT family N-acetyltransferase -
  ACLF6N_RS02410 (ACLF6N_02410) ydaG 475661..476083 (+) 423 WP_412052521.1 pyridoxamine 5'-phosphate oxidase family protein -
  ACLF6N_RS02415 (ACLF6N_02415) amj 476589..477398 (+) 810 WP_103330340.1 lipid II flippase Amj -
  ACLF6N_RS02420 (ACLF6N_02420) ydzA 477443..477733 (-) 291 WP_014478869.1 DUF3817 domain-containing protein -
  ACLF6N_RS02425 (ACLF6N_02425) lrpC 477918..478352 (+) 435 WP_003246585.1 transcriptional regulator LrpC Machinery gene
  ACLF6N_RS02430 (ACLF6N_02430) topB 478417..480600 (+) 2184 WP_041336817.1 DNA topoisomerase III -
  ACLF6N_RS02435 (ACLF6N_02435) mutT 480713..481162 (+) 450 WP_017697018.1 8-oxo-dGTP diphosphatase MutT -
  ACLF6N_RS02440 (ACLF6N_02440) poxB 481229..482861 (+) 1633 Protein_438 pyruvate oxidase -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 16450.03 Da        Isoelectric Point: 7.7037

>NTDB_id=970223 ACLF6N_RS02425 WP_003246585.1 477918..478352(+) (lrpC) [Bacillus subtilis strain KFRI-P74]
MKLDQIDLNIIEELKKDSRLSMRELGRKIKLSPPSVTERVRQLESFGIIKQYTLEVDQKKLGLPVSCIVEATVKNADYER
FKSYIQTLPNIEFCYRIAGAACYMLKINAESLEAVEDFINKTSPYAQTVTHVIFSEIDTKNGRG

Nucleotide


Download         Length: 435 bp        

>NTDB_id=970223 ACLF6N_RS02425 WP_003246585.1 477918..478352(+) (lrpC) [Bacillus subtilis strain KFRI-P74]
ATGAAACTTGACCAGATTGATCTGAATATCATTGAGGAGCTGAAGAAGGACAGCCGTTTGTCGATGAGGGAATTAGGCAG
AAAAATTAAGCTGTCGCCTCCATCTGTGACAGAACGGGTAAGACAGCTTGAATCGTTTGGCATCATTAAGCAATACACGC
TGGAGGTCGACCAGAAAAAACTGGGGCTTCCCGTTTCCTGCATTGTGGAAGCAACCGTTAAAAACGCGGATTACGAGCGG
TTCAAAAGCTATATTCAAACATTGCCGAATATTGAATTTTGCTACCGGATTGCGGGTGCAGCCTGCTATATGCTGAAAAT
CAATGCCGAAAGCCTCGAAGCGGTAGAAGATTTCATTAACAAAACATCGCCCTACGCGCAAACCGTCACTCACGTCATTT
TCTCAGAAATTGACACGAAAAACGGGCGCGGTTAG

Domains

Predicted by InterProScan.

Lrp/AsnC ligand binding domain (AsnC_trans_reg)

(70-135)

Winged helix-turn-helix DNA-binding (HTH_24)

(3-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lrpC Bacillus subtilis subsp. subtilis str. 168

100

100

1