Detailed information    

insolico Bioinformatically predicted

Overview


Name   ceuB   Type   Machinery gene
Locus tag   NST50_RS06470 Genome accession   NZ_CP150305
Coordinates   1462300..1463247 (+) Length   315 a.a.
NCBI ID   WP_036681839.1    Uniprot ID   A0A1R0X0A0
Organism   Paenibacillus sp. FSL E2-0202     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 1457300..1468247
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NST50_RS06440 (NST50_06440) - 1457616..1458581 (+) 966 WP_076142180.1 nitronate monooxygenase family protein -
  NST50_RS06445 (NST50_06445) - 1458666..1459760 (-) 1095 WP_076278031.1 Xaa-Pro peptidase family protein -
  NST50_RS06450 (NST50_06450) - 1459986..1460828 (+) 843 WP_340397825.1 SDR family oxidoreductase -
  NST50_RS06455 (NST50_06455) - 1460854..1461357 (+) 504 WP_076128102.1 GNAT family N-acetyltransferase -
  NST50_RS06460 (NST50_06460) - 1461375..1461719 (-) 345 WP_076128100.1 helix-turn-helix domain-containing protein -
  NST50_RS06465 (NST50_06465) - 1461811..1462071 (+) 261 WP_036681837.1 YqkE family protein -
  NST50_RS06470 (NST50_06470) ceuB 1462300..1463247 (+) 948 WP_036681839.1 ABC transporter permease Machinery gene
  NST50_RS06475 (NST50_06475) - 1463250..1464194 (+) 945 WP_076281998.1 iron chelate uptake ABC transporter family permease subunit -
  NST50_RS06480 (NST50_06480) - 1464188..1464943 (+) 756 WP_036681845.1 ABC transporter ATP-binding protein -
  NST50_RS06485 (NST50_06485) - 1465066..1466070 (+) 1005 WP_340397826.1 siderophore ABC transporter substrate-binding protein -
  NST50_RS06490 (NST50_06490) - 1466237..1466740 (+) 504 WP_036681849.1 sigma-70 family RNA polymerase sigma factor -
  NST50_RS06495 (NST50_06495) - 1466733..1467926 (+) 1194 WP_340034110.1 anti-sigma factor -

Sequence


Protein


Download         Length: 315 a.a.        Molecular weight: 34506.70 Da        Isoelectric Point: 10.0525

>NTDB_id=970137 NST50_RS06470 WP_036681839.1 1462300..1463247(+) (ceuB) [Paenibacillus sp. FSL E2-0202]
MKLKYLSLLLIVFSFISLFIGVKDISPLDLFHLTESQAQTLLVSRIPRLAALIIAGVSMSIAGLIMQQLSRNKFVSPTTA
GTMDSAKFGILVSLMLFTGATPMQKLLVAFVFALLGTFIFMRILDRIKFKDSIFIPLVGLMFGNIVGSITTFFAYKNDLI
QNISSWMLGDFSTIIKGQYELIYISIPLVILAYLFANKFTVAGMGEDFSVNLGMNYKAVVNVGLVIVALISSVVILTVGT
IPFLGLVVPNIVTLYIGDNLKKSLAHTAILGAVFLLFCDILGRLIIYPYEISISLTVGVIGSGLFIYLLMRRKAN

Nucleotide


Download         Length: 948 bp        

>NTDB_id=970137 NST50_RS06470 WP_036681839.1 1462300..1463247(+) (ceuB) [Paenibacillus sp. FSL E2-0202]
ATGAAACTAAAATATTTGTCCCTACTTCTAATAGTATTTTCATTTATATCTTTGTTTATAGGCGTTAAAGATATATCCCC
ATTAGATCTCTTTCATCTTACGGAATCTCAAGCACAGACCTTGCTGGTAAGCCGGATTCCCCGGTTAGCCGCATTGATTA
TCGCTGGAGTCAGCATGAGTATTGCCGGATTAATTATGCAACAGCTGTCACGCAATAAATTCGTCTCCCCGACTACGGCA
GGGACGATGGATTCCGCGAAATTTGGTATTCTCGTATCCCTCATGTTATTCACAGGCGCAACGCCAATGCAGAAATTGCT
GGTTGCTTTTGTTTTTGCACTATTGGGCACCTTTATTTTTATGAGAATCTTGGATCGGATCAAGTTCAAGGATAGTATTT
TTATCCCGCTGGTCGGACTCATGTTCGGCAACATTGTAGGCTCGATTACCACTTTTTTTGCGTATAAAAATGATTTGATT
CAGAATATCTCGTCTTGGATGCTTGGAGATTTCTCAACGATTATCAAAGGCCAATATGAATTAATTTATATCAGCATTCC
ACTTGTCATCCTGGCGTATCTCTTCGCTAATAAATTTACGGTAGCCGGTATGGGCGAGGATTTCTCCGTTAATCTTGGCA
TGAATTACAAAGCGGTTGTCAACGTGGGATTGGTAATTGTAGCGTTAATCTCTTCTGTTGTCATTTTAACCGTAGGTACG
ATTCCATTTCTGGGTCTGGTAGTACCTAACATTGTAACGTTGTACATAGGAGATAACCTCAAAAAAAGTCTGGCGCATAC
AGCCATTCTCGGAGCGGTGTTCCTCCTGTTCTGCGATATTCTGGGCAGGCTCATTATCTATCCATATGAAATATCAATCA
GTCTCACGGTAGGCGTCATCGGTAGTGGTCTGTTTATCTACTTGCTGATGAGAAGAAAGGCGAACTAG

Domains


Predicted by InterproScan.

(9-311)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A1R0X0A0

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

56.051

99.683

0.559


Multiple sequence alignment