Detailed information NTG0970119

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: ACLFAG_RS07480
• Genome accession: NZ_CP177247
• Coordinates: 1592000..1593004 (+)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain WYT
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1587000..1598004

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACLFAG_RS07450 (ACLFAG_07445)	fghA	1587092..1587943 (+)	852	WP_003113869.1	S-formylglutathione hydrolase	-
ACLFAG_RS07455 (ACLFAG_07450)	ispF	1588014..1588487 (+)	474	WP_003098560.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
ACLFAG_RS07460 (ACLFAG_07455)	truD	1588484..1589551 (+)	1068	WP_004345456.1	tRNA pseudouridine(13) synthase TruD	-
ACLFAG_RS07465 (ACLFAG_07460)	surE	1589539..1590288 (+)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
ACLFAG_RS07470 (ACLFAG_07465)	-	1590321..1590956 (+)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
ACLFAG_RS07475 (ACLFAG_07470)	-	1591002..1591895 (+)	894	WP_034044933.1	peptidoglycan DD-metalloendopeptidase family protein	-
ACLFAG_RS07480 (ACLFAG_07475)	rpoS	1592000..1593004 (+)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
ACLFAG_RS07485 (ACLFAG_07480)	fdxA	1593431..1593754 (-)	324	WP_003092272.1	ferredoxin FdxA	-
ACLFAG_RS07490 (ACLFAG_07485)	mutS	1593821..1596388 (-)	2568	WP_003113873.1	DNA mismatch repair protein MutS	-
ACLFAG_RS07495 (ACLFAG_07490)	-	1596514..1597521 (-)	1008	WP_043156450.1	TolB family protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=970119 ACLFAG_RS07480 WP_003113871.1 1592000..1593004(+) (rpoS) [Pseudomonas aeruginosa strain WYT]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=970119 ACLFAG_RS07480 WP_003113871.1 1592000..1593004(+) (rpoS) [Pseudomonas aeruginosa strain WYT]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAA
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCCCCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTGGACGTCTCTCTTGGTCCGGACTCGGATAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGACCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAATGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653