Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   MHH48_RS31805 Genome accession   NZ_CP150303
Coordinates   6970183..6971550 (-) Length   455 a.a.
NCBI ID   WP_009594669.1    Uniprot ID   A0A1R1AQC1
Organism   Paenibacillus sp. FSL F4-0100     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6965183..6976550
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MHH48_RS31780 (MHH48_31780) ispD 6965541..6966236 (-) 696 WP_076326239.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  MHH48_RS31785 (MHH48_31785) - 6966314..6967402 (-) 1089 WP_076326240.1 PIN/TRAM domain-containing protein -
  MHH48_RS31790 (MHH48_31790) - 6967788..6968183 (+) 396 WP_076326241.1 DUF1573 domain-containing protein -
  MHH48_RS31795 (MHH48_31795) pssA 6968307..6969041 (-) 735 WP_076326242.1 CDP-diacylglycerol--serine O-phosphatidyltransferase -
  MHH48_RS31800 (MHH48_31800) disA 6969093..6970169 (-) 1077 WP_076326243.1 DNA integrity scanning diadenylate cyclase DisA -
  MHH48_RS31805 (MHH48_31805) radA 6970183..6971550 (-) 1368 WP_009594669.1 DNA repair protein RadA Machinery gene
  MHH48_RS31810 (MHH48_31810) clpC 6972041..6974497 (-) 2457 WP_076326245.1 ATP-dependent protease ATP-binding subunit ClpC -
  MHH48_RS31815 (MHH48_31815) - 6974608..6975672 (-) 1065 WP_076326246.1 protein arginine kinase -
  MHH48_RS31820 (MHH48_31820) - 6975711..6976235 (-) 525 WP_076326247.1 UvrB/UvrC motif-containing protein -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 49595.35 Da        Isoelectric Point: 7.4121

>NTDB_id=970068 MHH48_RS31805 WP_009594669.1 6970183..6971550(-) (radA) [Paenibacillus sp. FSL F4-0100]
MAKTKTKFFCTECGYEAPKWFGKCPGCQSWNSMVEETETVIKTQGMNSPLFHSKEKPLSIINIESGKEPRIQTGIAELNR
VLGGGLVPGSLVLVGGDPGIGKSTLLLQASNRLAQNGIRVLYISGEESVRQTKLRADRLGALSPELFVLCETNLESIEEA
IENVQPGFVVIDSIQTVYLPEVTSAPGSVSQVRECTARFMRLAKVKGIATVLVGHVTKEGAIAGPRMLEHMVDCVLYFEG
ERHHTYRLLRAVKNRFGSTNEIGIFEMGEDGLREVGNPSELFLSERPLGVAGSTVVASMEGTRPVLVELQALISTTHFPS
PRRMGTGVDHHRMNLIIAVLEKRMGMYLQTQDAYLNVAGGVKLDEPAVDLAIAVSIASSFRDIPTKPYDVIFGEVGLTGE
VRAVSRAEQRVREAEKLGFKRVLMPEKSLKGWKHPKGIQIIGVNTVADALAVALD

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=970068 MHH48_RS31805 WP_009594669.1 6970183..6971550(-) (radA) [Paenibacillus sp. FSL F4-0100]
ATGGCAAAAACTAAAACGAAATTTTTCTGTACCGAGTGCGGCTATGAAGCGCCTAAATGGTTCGGAAAATGTCCGGGCTG
CCAATCATGGAACTCCATGGTAGAAGAGACCGAGACGGTAATCAAGACGCAGGGGATGAATTCCCCTCTTTTTCATAGTA
AAGAAAAACCCCTTTCGATCATAAATATAGAAAGCGGTAAAGAACCCAGAATCCAGACGGGCATTGCGGAATTGAACCGC
GTGCTCGGCGGCGGGCTTGTTCCGGGCTCGCTGGTGTTAGTCGGCGGTGACCCCGGCATCGGCAAATCCACGCTGCTGCT
GCAAGCCTCCAATCGATTGGCCCAGAACGGTATTCGCGTTCTGTACATTTCCGGTGAGGAATCCGTACGCCAGACCAAAC
TGCGTGCAGATCGGCTCGGGGCGCTGTCTCCGGAGCTGTTTGTCCTGTGTGAAACCAATCTGGAATCGATTGAGGAAGCC
ATTGAGAACGTGCAACCTGGCTTTGTTGTCATTGACTCCATTCAGACGGTGTATTTGCCGGAGGTAACCAGTGCGCCGGG
CAGCGTTTCCCAGGTGCGGGAGTGTACGGCACGCTTCATGCGATTGGCGAAGGTAAAGGGCATAGCGACCGTCCTGGTCG
GTCATGTGACCAAGGAAGGCGCTATTGCAGGCCCAAGGATGCTGGAGCACATGGTGGACTGTGTGCTTTATTTTGAAGGA
GAGCGTCACCATACTTACCGTTTGCTTCGTGCGGTAAAGAACCGTTTCGGTTCGACGAATGAGATTGGCATTTTTGAGAT
GGGTGAGGACGGACTTCGGGAAGTCGGGAATCCATCGGAACTGTTTTTATCTGAACGGCCCTTAGGGGTAGCGGGTTCGA
CCGTTGTTGCAAGCATGGAGGGAACTCGTCCGGTTCTGGTCGAGCTGCAGGCGCTCATCTCCACAACCCACTTCCCGTCC
CCGCGCCGGATGGGCACAGGGGTGGACCACCACCGCATGAATTTGATCATTGCCGTGCTGGAGAAAAGGATGGGCATGTA
CCTGCAAACGCAAGACGCCTATCTGAATGTTGCCGGCGGCGTGAAGCTCGATGAGCCAGCGGTGGATTTGGCCATAGCGG
TTAGCATTGCATCCAGCTTCCGCGACATTCCGACCAAGCCGTATGATGTCATCTTTGGCGAGGTTGGCCTGACCGGCGAG
GTACGTGCCGTTTCCAGAGCGGAACAAAGGGTAAGGGAAGCCGAGAAGCTGGGCTTTAAGCGCGTACTCATGCCGGAGAA
GAGTTTAAAGGGATGGAAGCATCCTAAAGGAATACAAATTATAGGAGTAAACACCGTTGCAGATGCATTAGCGGTTGCGT
TAGATTAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(344-427)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-35)

AAA domain (AAA_25)

(70-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1R1AQC1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

66.885

100

0.675
  radA Streptococcus pneumoniae Rx1

59.111

98.901

0.585
  radA Streptococcus pneumoniae D39

59.111

98.901

0.585
  radA Streptococcus pneumoniae R6

59.111

98.901

0.585
  radA Streptococcus pneumoniae TIGR4

59.111

98.901

0.585
  radA Streptococcus mitis NCTC 12261

59.111

98.901

0.585
  radA Streptococcus mitis SK321

58.889

98.901

0.582

Multiple sequence alignment