Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   MHH48_RS23675 Genome accession   NZ_CP150303
Coordinates   5260323..5261276 (-) Length   317 a.a.
NCBI ID   WP_076325075.1    Uniprot ID   -
Organism   Paenibacillus sp. FSL F4-0100     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5255323..5266276
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MHH48_RS23655 (MHH48_23655) - 5255856..5257280 (-) 1425 WP_076325071.1 NAD-dependent succinate-semialdehyde dehydrogenase -
  MHH48_RS23660 (MHH48_23660) - 5257458..5258429 (-) 972 WP_076325072.1 siderophore ABC transporter substrate-binding protein -
  MHH48_RS23665 (MHH48_23665) - 5258631..5259389 (-) 759 WP_076325073.1 ABC transporter ATP-binding protein -
  MHH48_RS23670 (MHH48_23670) - 5259386..5260333 (-) 948 WP_076325074.1 iron chelate uptake ABC transporter family permease subunit -
  MHH48_RS23675 (MHH48_23675) ceuB 5260323..5261276 (-) 954 WP_076325075.1 ABC transporter permease Machinery gene
  MHH48_RS23680 (MHH48_23680) - 5261804..5262406 (+) 603 WP_076325076.1 nitroreductase family protein -
  MHH48_RS23685 (MHH48_23685) - 5262776..5263381 (+) 606 WP_076325077.1 YkoF family thiamine/hydroxymethylpyrimidine-binding protein -
  MHH48_RS23690 (MHH48_23690) - 5263453..5263551 (-) 99 WP_076325078.1 sporulation protein YjcZ -
  MHH48_RS23695 (MHH48_23695) - 5263669..5264367 (-) 699 WP_076325079.1 nucleotidyltransferase domain-containing protein -
  MHH48_RS23700 (MHH48_23700) - 5264515..5265237 (+) 723 WP_076325080.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 34972.43 Da        Isoelectric Point: 10.0377

>NTDB_id=970063 MHH48_RS23675 WP_076325075.1 5260323..5261276(-) (ceuB) [Paenibacillus sp. FSL F4-0100]
MKIRYLFAAVVVLSIISLFIGVKDISPLQLFSMTEQQQHIMLVSRIPRLVSLILAGVSMSICGLIMQQLSRNKFVSPTTA
GTMDSARLGILVAMLVFTTSGPLIKMLVAFVFALAGTFIFMKILDRIKFKDAIFIPLVGLMFGNIVSSIATFFAYKYDLI
QNMSAWLQGDFSMIMKGQYEMLYISIPLLILAYLFANKFTVAGMGEEFATNLGLHYRRVVNLGLVIVALVTASVVLTVGV
IPFLGLIIPNIVSLYLGDHLKKSLSHTALLGAGFVLFCDILGRIIIYPYEIPISLTVGVLGSGIFIFLLMRRKAYDL

Nucleotide


Download         Length: 954 bp        

>NTDB_id=970063 MHH48_RS23675 WP_076325075.1 5260323..5261276(-) (ceuB) [Paenibacillus sp. FSL F4-0100]
ATGAAGATTAGATACTTATTTGCAGCCGTTGTGGTACTCTCGATAATCTCATTATTTATTGGAGTTAAAGATATCTCGCC
ACTGCAACTGTTCTCGATGACAGAACAACAACAGCATATTATGCTTGTAAGCCGGATTCCTAGGCTTGTCAGTCTTATAT
TGGCGGGTGTCAGCATGAGTATCTGCGGATTGATCATGCAGCAGCTCAGCCGCAATAAGTTCGTATCGCCGACCACGGCA
GGCACGATGGACTCTGCCAGACTGGGGATTTTGGTAGCCATGCTCGTCTTCACGACAAGCGGTCCGCTTATCAAAATGCT
CGTGGCATTTGTATTCGCTCTGGCAGGAACCTTTATTTTCATGAAGATACTGGATCGGATTAAGTTTAAGGATGCGATCT
TCATCCCGCTCGTAGGGCTGATGTTTGGTAATATCGTGAGTTCGATAGCCACCTTCTTTGCATACAAATATGATCTTATT
CAGAATATGTCCGCATGGCTTCAGGGTGATTTTTCCATGATCATGAAGGGCCAGTATGAAATGCTCTATATTAGTATCCC
GCTTTTGATTCTGGCGTATCTGTTCGCCAACAAGTTTACGGTGGCCGGAATGGGAGAGGAGTTTGCAACCAACCTGGGTC
TTCACTACCGGAGAGTTGTGAATCTGGGATTGGTCATCGTGGCGCTGGTTACGGCATCTGTTGTGCTGACGGTCGGCGTG
ATTCCGTTTCTTGGTCTGATCATCCCTAATATTGTCAGTTTGTACTTAGGAGACCACTTGAAAAAAAGCCTTTCGCATAC
CGCGCTGCTGGGGGCCGGGTTCGTACTGTTCTGTGACATCTTGGGCCGGATCATTATTTATCCCTATGAAATTCCGATTA
GTCTAACCGTGGGCGTACTCGGAAGCGGTATATTCATTTTCTTACTGATGAGGAGAAAGGCTTATGACTTATAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

54.603

99.369

0.543

Multiple sequence alignment