Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   ACLEAH_RS09585 Genome accession   NZ_CP177242
Coordinates   2013649..2013978 (+) Length   109 a.a.
NCBI ID   WP_003091430.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain SM45     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2008649..2018978
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLEAH_RS09570 (ACLEAH_09570) - 2009349..2010308 (+) 960 WP_073657243.1 UDP-glucose 4-epimerase family protein -
  ACLEAH_RS09575 (ACLEAH_09575) - 2010305..2011330 (+) 1026 WP_009313766.1 MraY family glycosyltransferase -
  ACLEAH_RS09580 (ACLEAH_09580) - 2011461..2013458 (+) 1998 WP_009313767.1 polysaccharide biosynthesis protein -
  ACLEAH_RS09585 (ACLEAH_09585) comEA/comE1 2013649..2013978 (+) 330 WP_003091430.1 ComEA family DNA-binding protein Machinery gene
  ACLEAH_RS09595 (ACLEAH_09595) - 2014196..2015392 (-) 1197 WP_033996105.1 amino acid aminotransferase -
  ACLEAH_RS09600 (ACLEAH_09600) uvrB 2015580..2017592 (+) 2013 WP_003138489.1 excinuclease ABC subunit UvrB Machinery gene

Sequence

Protein


Download         Length: 109 a.a.        Molecular weight: 11367.31 Da        Isoelectric Point: 8.0459

>NTDB_id=970024 ACLEAH_RS09585 WP_003091430.1 2013649..2013978(+) (comEA/comE1) [Pseudomonas aeruginosa strain SM45]
MHLIKSALLLILFACLPFSASAAPVAVAKNPLAATTPATTVSPGEQVNINTVDEAALIRGLNGVGEAKARAILEYRAAHG
PFVSVDQLLEVKGVGPALLEKNRSRIVIE

Nucleotide


Download         Length: 330 bp        

>NTDB_id=970024 ACLEAH_RS09585 WP_003091430.1 2013649..2013978(+) (comEA/comE1) [Pseudomonas aeruginosa strain SM45]
ATGCACCTAATCAAATCCGCTCTGCTTCTCATCCTGTTCGCCTGTCTTCCGTTTTCGGCTTCCGCCGCACCGGTCGCCGT
CGCCAAGAATCCGCTGGCCGCAACGACACCTGCGACGACCGTGTCGCCGGGGGAGCAGGTCAATATCAATACGGTCGATG
AGGCCGCCCTGATACGGGGGCTCAACGGTGTCGGCGAGGCCAAGGCCAGGGCGATCCTCGAGTATCGTGCGGCCCATGGT
CCGTTCGTCTCGGTGGATCAACTGCTGGAAGTGAAAGGGGTAGGCCCGGCGTTGCTGGAGAAGAACCGGTCGCGGATCGT
CATCGAGTGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(44-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

40.385

95.413

0.385