Detailed information NTG0970019

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: ACLEAH_RS06885
• Genome accession: NZ_CP177242
• Coordinates: 1462412..1463416 (+)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain SM45
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1457412..1468416

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACLEAH_RS06855 (ACLEAH_06855)	fghA	1457504..1458355 (+)	852	WP_003092349.1	S-formylglutathione hydrolase	-
ACLEAH_RS06860 (ACLEAH_06860)	ispF	1458426..1458899 (+)	474	WP_003092346.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
ACLEAH_RS06865 (ACLEAH_06865)	truD	1458896..1459963 (+)	1068	WP_003092343.1	tRNA pseudouridine(13) synthase TruD	-
ACLEAH_RS06870 (ACLEAH_06870)	surE	1459951..1460700 (+)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
ACLEAH_RS06875 (ACLEAH_06875)	-	1460733..1461368 (+)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
ACLEAH_RS06880 (ACLEAH_06880)	-	1461414..1462307 (+)	894	WP_023092574.1	peptidoglycan DD-metalloendopeptidase family protein	-
ACLEAH_RS06885 (ACLEAH_06885)	rpoS	1462412..1463416 (+)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
ACLEAH_RS06890 (ACLEAH_06890)	fdxA	1463843..1464166 (-)	324	WP_003092272.1	ferredoxin FdxA	-
ACLEAH_RS06895 (ACLEAH_06895)	mutS	1464233..1466800 (-)	2568	WP_003122151.1	DNA mismatch repair protein MutS	-
ACLEAH_RS06900 (ACLEAH_06900)	-	1466926..1467933 (-)	1008	WP_021265158.1	TolB family protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=970019 ACLEAH_RS06885 WP_003113871.1 1462412..1463416(+) (rpoS) [Pseudomonas aeruginosa strain SM45]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=970019 ACLEAH_RS06885 WP_003113871.1 1462412..1463416(+) (rpoS) [Pseudomonas aeruginosa strain SM45]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAA
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCACCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTAGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGATCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGTCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCTTGGAGAAGAACGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653