Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   NST93_RS14750 Genome accession   NZ_CP150301
Coordinates   2898775..2900148 (+) Length   457 a.a.
NCBI ID   WP_405098305.1    Uniprot ID   -
Organism   Oceanobacillus sp. FSL H7-0719     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2893775..2905148
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NST93_RS14730 (NST93_14665) - 2894041..2894508 (+) 468 WP_405098297.1 CtsR family transcriptional regulator -
  NST93_RS14735 (NST93_14670) - 2894551..2895099 (+) 549 WP_405098299.1 UvrB/UvrC motif-containing protein -
  NST93_RS14740 (NST93_14675) - 2895096..2896157 (+) 1062 WP_405098301.1 protein arginine kinase -
  NST93_RS14745 (NST93_14680) clpC 2896171..2898600 (+) 2430 WP_405098303.1 ATP-dependent protease ATP-binding subunit ClpC -
  NST93_RS14750 (NST93_14685) radA 2898775..2900148 (+) 1374 WP_405098305.1 DNA repair protein RadA Machinery gene
  NST93_RS14755 (NST93_14690) - 2900349..2901446 (+) 1098 WP_405098307.1 PIN/TRAM domain-containing protein -
  NST93_RS14760 (NST93_14695) gltX 2901589..2903058 (+) 1470 WP_405098309.1 glutamate--tRNA ligase -
  NST93_RS14765 (NST93_14700) cysE 2903392..2904093 (+) 702 WP_405098311.1 serine O-acetyltransferase -

Sequence

Protein


Download         Length: 457 a.a.        Molecular weight: 50203.77 Da        Isoelectric Point: 7.3685

>NTDB_id=970011 NST93_RS14750 WP_405098305.1 2898775..2900148(+) (radA) [Oceanobacillus sp. FSL H7-0719]
MAKRKNKFVCQDCGYESAKWMGKCPGCGNWNTMVEEIQAPVSGGRHVSSGSGRKVSKPEKITALESQKEPRITTEMKEFN
RVLGGGVVPGSLVLIGGDPGIGKSTLLLQISSQIAKKKMPVLYVSGEESTRQTKLRAERLGVDEDELYVLSETNLQDISN
QIEELQPQLVIIDSIQTIYREEVASAPGSVSQVRECTGELMRIAKTNHISIFIVGHVTKEGSIAGPRLLEHMVDAVLYFE
GERHHTYRILRGVKNRFGSTHEMGIFEMKEEGLREVLNASEIFLEERTAGAAGSTVVASMEGTRPVLVEIQALISPSSFG
NPRRMATGIDYNRVPLIMAVLEKRVGFMLQNQDAYIKVAGGVKLDEPAIDLAIAISIASSFRDQATEPKDIFIGEVGLTG
EIRRVSRIEQRVQEAAKLGFKRVICPKNNLDGWKTPKDIQVVGVSTVQEALEIALAR

Nucleotide


Download         Length: 1374 bp        

>NTDB_id=970011 NST93_RS14750 WP_405098305.1 2898775..2900148(+) (radA) [Oceanobacillus sp. FSL H7-0719]
ATGGCTAAACGCAAGAATAAATTTGTCTGCCAAGATTGCGGGTATGAATCAGCAAAATGGATGGGCAAGTGCCCTGGCTG
CGGCAACTGGAATACAATGGTAGAAGAAATCCAAGCACCAGTCTCAGGTGGAAGACATGTATCCAGTGGCAGCGGACGAA
AAGTAAGCAAGCCAGAAAAAATTACCGCACTCGAATCACAGAAAGAACCGCGTATTACCACAGAGATGAAGGAATTTAAT
CGTGTGCTTGGAGGCGGTGTTGTACCGGGCTCTCTTGTTTTAATTGGCGGAGATCCTGGAATTGGAAAGTCAACCCTGCT
TCTGCAAATCTCTTCGCAAATTGCCAAGAAAAAAATGCCAGTGCTTTATGTATCAGGAGAGGAATCAACAAGGCAGACGA
AACTGCGAGCAGAACGCTTAGGTGTAGATGAAGATGAATTATATGTCCTAAGTGAAACAAACCTTCAAGATATTAGTAAT
CAAATTGAAGAATTACAGCCTCAGCTTGTCATCATTGATTCAATCCAAACAATTTATCGAGAAGAAGTAGCCAGTGCTCC
AGGGAGTGTCTCACAGGTTCGTGAGTGTACTGGGGAATTAATGCGCATTGCGAAAACAAATCATATATCAATCTTTATAG
TAGGACATGTCACGAAGGAAGGTTCGATTGCTGGACCAAGGTTATTGGAACATATGGTGGATGCAGTGCTCTATTTTGAG
GGAGAGCGGCATCATACATATCGAATTTTGCGTGGTGTAAAGAATCGTTTTGGAAGTACACATGAAATGGGTATCTTTGA
AATGAAAGAAGAAGGGCTTCGTGAAGTATTAAATGCTTCTGAGATTTTCCTTGAAGAAAGAACAGCGGGAGCAGCAGGTT
CAACAGTTGTAGCTTCTATGGAAGGGACACGACCGGTACTTGTTGAAATACAAGCATTGATTTCCCCCTCAAGCTTTGGA
AATCCAAGAAGAATGGCGACGGGAATTGATTATAATCGAGTGCCTCTCATTATGGCAGTATTGGAAAAAAGGGTCGGTTT
CATGCTGCAAAATCAAGATGCATATATTAAAGTAGCAGGCGGAGTGAAGCTGGATGAGCCGGCAATTGACCTGGCAATTG
CAATTAGTATTGCATCGAGTTTTAGAGACCAGGCAACTGAGCCAAAAGATATCTTTATCGGTGAGGTAGGTCTTACAGGT
GAAATAAGAAGGGTTTCTAGAATTGAACAGCGTGTACAGGAAGCTGCAAAGCTTGGCTTTAAACGCGTAATTTGCCCGAA
GAATAACCTGGATGGCTGGAAGACGCCTAAAGATATTCAAGTTGTTGGCGTATCTACGGTACAAGAAGCGTTGGAAATTG
CACTTGCGAGATAG

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(71-221)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(345-429)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

73.304

100

0.733
  radA Streptococcus mitis NCTC 12261

63.596

99.781

0.635
  radA Streptococcus pneumoniae Rx1

63.596

99.781

0.635
  radA Streptococcus pneumoniae D39

63.596

99.781

0.635
  radA Streptococcus pneumoniae R6

63.596

99.781

0.635
  radA Streptococcus pneumoniae TIGR4

63.596

99.781

0.635
  radA Streptococcus mitis SK321

63.377

99.781

0.632

Multiple sequence alignment