Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   NST93_RS02755 Genome accession   NZ_CP150301
Coordinates   545538..547856 (+) Length   772 a.a.
NCBI ID   WP_405100962.1    Uniprot ID   -
Organism   Oceanobacillus sp. FSL H7-0719     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 540538..552856
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NST93_RS02730 (NST93_02715) - 540583..541866 (-) 1284 WP_405100952.1 replication-associated recombination protein A -
  NST93_RS02735 (NST93_02720) cymR 542121..542540 (+) 420 WP_405100954.1 cysteine metabolism transcriptional regulator CymR -
  NST93_RS02740 (NST93_02725) - 542565..543707 (+) 1143 WP_405100956.1 cysteine desulfurase family protein -
  NST93_RS02745 (NST93_02730) mnmA 543721..544833 (+) 1113 WP_405100958.1 tRNA 2-thiouridine(34) synthase MnmA -
  NST93_RS02750 (NST93_02735) - 544850..545512 (+) 663 WP_405100960.1 tetratricopeptide repeat protein -
  NST93_RS02755 (NST93_02740) recD2 545538..547856 (+) 2319 WP_405100962.1 ATP-dependent RecD-like DNA helicase Machinery gene
  NST93_RS02760 (NST93_02745) - 547921..548103 (+) 183 WP_405100964.1 hypothetical protein -
  NST93_RS02765 (NST93_02750) - 548156..549223 (+) 1068 WP_405100966.1 AI-2E family transporter -
  NST93_RS02770 (NST93_02755) alaS 549539..552184 (+) 2646 WP_405100968.1 alanine--tRNA ligase -
  NST93_RS02775 (NST93_02760) - 552273..552539 (+) 267 WP_405100970.1 IreB family regulatory phosphoprotein -

Sequence

Protein


Download         Length: 772 a.a.        Molecular weight: 87816.64 Da        Isoelectric Point: 4.6258

>NTDB_id=969985 NST93_RS02755 WP_405100962.1 545538..547856(+) (recD2) [Oceanobacillus sp. FSL H7-0719]
MEDQQEIIEKGYIRGYLLYTIFQNESENFSIIKIKIEETNEDFDEREIVAKGYFTQLTEESSYTFYGTFENHSKFGVQYR
VDSYQTYIPDTKEGLISYLSSDLFYAVGIKTAEKIVDKLGTNAIKKILDDPDCLHEIPGLNKKTAEQLHKSLEEHQGFEH
IAISLANYQLGLKMAQRIYQEYKEEAISRLHDDPYQFVFDVEGFGFQTADRIARSNGISMTHPNRIGAGCIFVLQKSIQE
GHVYLPIDQCAGQVYQLLGLYQMEKDAIVDRLEQLNSEKKVIILDGNIYLPSLYYAEDGFVAHLDRIMKKTVETESTLAE
LMKITGEIEEEEVLSYGKEQFNAIEKSLHSRIMILTGGPGTGKTTVIKGIVKAFSAIHDLSLDIDDYDKKSEFPFVLTAP
TGRAAKRLSESTGLPAVTIHRLLGWDGNDSFDRDENNPLSGRFLIVDEFSMVDIWLANNLFKAIPDNMQVLLVGDEDQLP
SVGPGQVLSDLLASEKIPVVQLDEVYRQKEGSKIIQLAHEIKNDSITDESLKNAKDFSFIAANERQMVQLIATIYKRAID
KGIEANDIQVLAPIYRTEAGINKINAELQEMVNPKTDKKREVKVMEVSYRVGDRVIQLVNQPEDGIFNGDIGEIVAIFFE
NENKEKKEQIVIAFDEKEIVYERKDYSNFMHAYCISIHKSQGSEFPIVILPVISAYYRMLRKNLLYTAITRSKESLIICG
EGNAFLRGVNTVDTNNRYTTLVSQLENRLNAEPHLLALEDKEEEEISPYDFM

Nucleotide


Download         Length: 2319 bp        

>NTDB_id=969985 NST93_RS02755 WP_405100962.1 545538..547856(+) (recD2) [Oceanobacillus sp. FSL H7-0719]
ATGGAAGATCAACAAGAGATAATTGAAAAAGGATATATTCGCGGATATCTCCTTTATACAATTTTTCAAAATGAAAGTGA
AAACTTCTCTATTATAAAAATTAAAATAGAAGAGACAAATGAAGACTTTGATGAACGAGAAATTGTTGCGAAAGGATATT
TTACACAGCTTACTGAGGAGAGTTCGTATACCTTTTACGGGACCTTTGAAAATCACAGTAAGTTTGGTGTGCAATATCGC
GTTGATTCCTATCAAACCTATATACCTGATACGAAGGAAGGCTTAATATCTTATCTTTCCAGTGATCTTTTTTATGCAGT
TGGAATAAAAACTGCGGAGAAAATTGTAGATAAGCTGGGAACAAATGCAATAAAAAAAATTCTTGATGACCCGGACTGTC
TGCATGAAATTCCGGGTCTCAATAAAAAAACTGCTGAACAGTTACATAAGAGTCTCGAAGAACATCAAGGCTTTGAGCAT
ATTGCTATTTCACTGGCAAATTACCAGCTCGGATTAAAAATGGCGCAAAGAATATATCAGGAATATAAAGAAGAAGCAAT
TAGTAGATTACATGATGACCCATATCAATTCGTATTTGATGTTGAAGGGTTTGGTTTTCAAACTGCCGACCGTATAGCAC
GCTCGAATGGGATATCAATGACACATCCAAACCGGATTGGGGCAGGGTGTATTTTTGTTTTACAAAAAAGTATCCAAGAA
GGTCATGTTTATTTACCAATCGATCAATGCGCAGGACAGGTGTATCAGCTGCTTGGACTTTATCAAATGGAAAAAGATGC
AATTGTTGACAGGCTGGAACAACTCAATAGTGAGAAGAAAGTTATCATACTAGATGGAAACATTTATTTACCTTCTCTTT
ATTATGCTGAAGACGGATTTGTTGCACATTTAGACCGAATTATGAAAAAAACAGTAGAGACAGAATCGACTCTCGCTGAA
TTGATGAAAATAACTGGTGAAATTGAGGAAGAAGAAGTTTTAAGCTATGGCAAGGAACAGTTTAATGCAATTGAAAAATC
ACTTCATTCAAGAATTATGATATTAACTGGTGGACCGGGAACTGGTAAAACAACAGTAATTAAGGGAATTGTAAAAGCAT
TCTCTGCTATCCACGATTTATCTCTTGATATCGATGACTACGATAAAAAGTCAGAATTCCCTTTTGTCCTTACCGCTCCA
ACTGGACGTGCAGCGAAGCGTTTAAGTGAGTCAACAGGTCTCCCCGCAGTAACAATTCACCGTTTGCTGGGATGGGACGG
CAATGATTCATTTGACAGGGATGAAAATAATCCACTTTCTGGCCGTTTTCTGATTGTAGACGAGTTTTCGATGGTTGATA
TTTGGCTGGCCAATAACTTATTTAAAGCAATCCCAGACAATATGCAAGTATTGCTTGTAGGGGATGAAGATCAGCTTCCT
TCCGTAGGTCCAGGTCAAGTGCTCTCTGATTTATTGGCAAGTGAAAAAATCCCTGTTGTTCAACTGGATGAGGTATATCG
TCAAAAAGAAGGTTCAAAGATTATCCAACTTGCACATGAAATAAAAAATGATTCAATTACAGATGAGTCATTGAAGAATG
CTAAGGATTTTAGTTTTATTGCTGCTAATGAACGGCAGATGGTGCAGTTAATTGCAACAATTTATAAGCGTGCAATTGAT
AAAGGAATTGAAGCGAATGATATTCAAGTGCTTGCTCCCATTTACAGAACAGAAGCGGGAATAAATAAAATTAATGCAGA
ATTGCAAGAAATGGTTAATCCGAAAACAGATAAAAAACGTGAAGTGAAAGTGATGGAAGTAAGTTACCGAGTGGGGGACA
GGGTTATTCAATTAGTAAATCAGCCTGAGGATGGAATCTTTAATGGTGACATCGGTGAGATTGTGGCGATATTCTTTGAA
AATGAAAATAAAGAAAAGAAAGAACAGATTGTAATCGCGTTTGATGAGAAAGAGATTGTTTATGAAAGAAAGGACTATAG
CAATTTCATGCATGCATATTGCATTTCTATCCATAAATCACAAGGAAGTGAATTTCCGATTGTCATTCTGCCAGTCATTT
CCGCATATTACCGCATGCTGCGTAAAAACTTGCTATACACTGCTATTACAAGAAGTAAAGAATCATTGATTATTTGTGGT
GAAGGAAATGCTTTTCTCCGTGGGGTTAATACGGTAGATACAAATAATCGCTATACAACCTTAGTCAGTCAACTAGAAAA
CAGATTAAATGCTGAACCGCACTTACTTGCTTTAGAAGATAAAGAGGAAGAAGAAATATCTCCATATGATTTTATGTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix domain (HHH_5)

(107-153)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(584-654)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(671-719)

AAA domain (AAA_30)

(336-542)

Helix-hairpin-helix containing domain (HHH_RecD2)

(154-244)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

47.529

100

0.486

Multiple sequence alignment