Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   MHI51_RS30455 Genome accession   NZ_CP150298
Coordinates   6859264..6859770 (-) Length   168 a.a.
NCBI ID   WP_036677780.1    Uniprot ID   A0AA95LKX1
Organism   Paenibacillus sp. FSL H8-0260     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 6854264..6864770
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MHI51_RS30440 (MHI51_30350) opp4A 6854598..6856316 (-) 1719 WP_405173477.1 oligopeptide ABC transporter substrate-binding protein -
  MHI51_RS30445 (MHI51_30355) - 6856510..6858459 (-) 1950 WP_405173478.1 endonuclease MutS2 -
  MHI51_RS30450 (MHI51_30360) rpsR 6858970..6859242 (-) 273 WP_036651767.1 30S ribosomal protein S18 -
  MHI51_RS30455 (MHI51_30365) ssbA 6859264..6859770 (-) 507 WP_036677780.1 single-stranded DNA-binding protein Machinery gene
  MHI51_RS30460 (MHI51_30370) rpsF 6859819..6860103 (-) 285 WP_036677776.1 30S ribosomal protein S6 -
  MHI51_RS30465 (MHI51_30375) - 6860321..6860518 (+) 198 WP_036677774.1 YjzC family protein -
  MHI51_RS30475 (MHI51_30385) - 6861020..6861232 (-) 213 WP_036677772.1 DUF951 domain-containing protein -
  MHI51_RS30480 (MHI51_30390) - 6861232..6862275 (-) 1044 WP_076191465.1 mechanosensitive ion channel family protein -
  MHI51_RS30485 (MHI51_30395) - 6862297..6862542 (-) 246 WP_076124321.1 DUF3343 domain-containing protein -
  MHI51_RS30490 (MHI51_30400) yyaC 6862662..6863270 (+) 609 WP_036677770.1 spore protease YyaC -
  MHI51_RS30495 (MHI51_30405) - 6863242..6863742 (-) 501 WP_076276330.1 DUF4446 family protein -

Sequence

Protein


Download         Length: 168 a.a.        Molecular weight: 18518.32 Da        Isoelectric Point: 4.8280

>NTDB_id=969918 MHI51_RS30455 WP_036677780.1 6859264..6859770(-) (ssbA) [Paenibacillus sp. FSL H8-0260]
MLNRIILIGRLTRDPELRYTPAGVAVTQFTLAVDRNFTGQNGEREADFIPVVTWRQLAETCANYLRKGRLTAVEGRIQVR
NYENNEGKRVYVTEVIADNVRFLESSQSREGGNTSSGASSMPEEPAYGGGGNAGRGNNNNNFSRNNNTQDPFSGDGKPID
ISDDDLPF

Nucleotide


Download         Length: 507 bp        

>NTDB_id=969918 MHI51_RS30455 WP_036677780.1 6859264..6859770(-) (ssbA) [Paenibacillus sp. FSL H8-0260]
TTGTTGAACCGTATCATTTTGATCGGACGGTTGACCCGTGACCCGGAACTTCGTTATACTCCCGCTGGTGTTGCCGTAAC
TCAATTTACGCTTGCCGTAGATCGTAACTTTACGGGCCAGAACGGTGAACGTGAGGCAGACTTCATCCCGGTTGTTACCT
GGAGACAGCTAGCAGAAACCTGTGCCAATTATTTGCGCAAAGGTCGTCTGACAGCAGTGGAAGGACGCATCCAAGTGCGG
AACTATGAGAATAACGAAGGTAAACGTGTATACGTAACTGAAGTTATTGCTGATAATGTTCGTTTCCTGGAATCTTCACA
AAGCCGTGAAGGTGGAAATACTTCAAGTGGTGCAAGTAGTATGCCTGAAGAGCCAGCATATGGTGGCGGTGGTAACGCTG
GACGCGGAAATAACAACAATAATTTCTCGCGTAACAACAATACTCAAGATCCTTTTTCGGGCGATGGTAAACCGATTGAT
ATATCGGATGATGATTTGCCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

54.802

100

0.577
  ssb Latilactobacillus sakei subsp. sakei 23K

49.708

100

0.506

Multiple sequence alignment