Detailed information    

insolico Bioinformatically predicted

Overview

Name   scnR   Type   Regulator
Locus tag   ACJWMD_RS10505 Genome accession   NZ_CP177182
Coordinates   2197846..2198544 (-) Length   232 a.a.
NCBI ID   WP_002887195.1    Uniprot ID   -
Organism   Streptococcus salivarius strain MRD6060     
Function   regulate comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 2192846..2203544
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACJWMD_RS10480 - 2193865..2194470 (+) 606 WP_002887188.1 response regulator -
  ACJWMD_RS10485 - 2194777..2195322 (+) 546 Protein_2009 IS110 family transposase -
  ACJWMD_RS10490 - 2195280..2195858 (+) 579 WP_286009533.1 transposase -
  ACJWMD_RS10495 - 2196158..2196396 (+) 239 Protein_2011 helical hairpin domain-containing protein -
  ACJWMD_RS10500 - 2196468..2197709 (-) 1242 WP_002887193.1 sensor histidine kinase -
  ACJWMD_RS10505 scnR 2197846..2198544 (-) 699 WP_002887195.1 response regulator transcription factor Regulator
  ACJWMD_RS10510 - 2198741..2198911 (+) 171 WP_002887196.1 lacticin 481 family lantibiotic -
  ACJWMD_RS10515 sivM 2199077..2201790 (+) 2714 Protein_2015 salivaricin 9 biosynthesis lanthionine synthetase SivM -

Sequence

Protein


Download         Length: 232 a.a.        Molecular weight: 26348.61 Da        Isoelectric Point: 5.4210

>NTDB_id=969895 ACJWMD_RS10505 WP_002887195.1 2197846..2198544(-) (scnR) [Streptococcus salivarius strain MRD6060]
MDIEAPFLARKILVVDDDVALNHSIREILSVSGFSKIYSAYSISEGIESFVKNSIDLIILDVMLPDGEGYLLSKYVRKKS
DIPILFLTAKNEPEDEIQGLQSGGDDFITKPFLPKILIYRTISLLRRSYKEDSSTIKLDHCIINLGNAIVEKDNEKLSLT
PIEIQIIRKLYDNKNYIVSTEAICDTVWGIDSFGYEKSLMVHIRNIREKIELNPSKPQYLVTVKGLGYKLMV

Nucleotide


Download         Length: 699 bp        

>NTDB_id=969895 ACJWMD_RS10505 WP_002887195.1 2197846..2198544(-) (scnR) [Streptococcus salivarius strain MRD6060]
ATGGATATAGAAGCGCCTTTTTTGGCTAGGAAAATATTGGTTGTTGATGATGATGTTGCGTTAAATCATTCAATAAGGGA
GATACTGTCAGTTTCTGGTTTCTCAAAAATATATAGTGCATACAGCATCAGTGAAGGAATAGAGTCTTTTGTTAAAAATT
CTATTGATTTGATTATATTAGATGTCATGCTTCCTGACGGGGAAGGGTATTTATTATCAAAATATGTTAGAAAAAAATCT
GATATTCCAATTCTTTTTCTAACAGCAAAAAATGAACCTGAAGATGAAATTCAAGGTCTACAATCTGGAGGAGATGATTT
TATAACTAAGCCTTTCCTACCTAAAATTCTCATTTATCGTACGATTTCGCTTCTTCGGCGATCGTACAAAGAAGACAGTA
GTACTATTAAATTAGATCATTGTATTATTAATTTAGGGAATGCAATTGTTGAAAAAGATAATGAAAAATTATCTTTAACC
CCAATAGAAATTCAAATCATTCGAAAATTGTATGATAATAAAAACTATATTGTATCTACAGAGGCGATTTGTGATACAGT
ATGGGGTATTGATAGCTTTGGATATGAAAAATCTTTAATGGTTCATATTAGAAATATCAGAGAAAAAATCGAACTTAATC
CTTCAAAGCCACAATACTTGGTTACTGTTAAAGGACTTGGCTACAAACTAATGGTGTAG

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(12-117)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(155-230)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  scnR Streptococcus mutans UA159

44.843

96.121

0.431