Detailed information    

insolico Bioinformatically predicted

Overview

Name   rexB   Type   Machinery gene
Locus tag   ACJWMD_RS08700 Genome accession   NZ_CP177182
Coordinates   1837109..1840429 (-) Length   1106 a.a.
NCBI ID   WP_004183412.1    Uniprot ID   -
Organism   Streptococcus salivarius strain MRD6060     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1832109..1845429
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACJWMD_RS08690 - 1832381..1833112 (+) 732 WP_002891763.1 DUF554 domain-containing protein -
  ACJWMD_RS08695 rexA 1833466..1837119 (-) 3654 WP_004183410.1 helicase-exonuclease AddAB subunit AddA Machinery gene
  ACJWMD_RS08700 rexB 1837109..1840429 (-) 3321 WP_004183412.1 ATP-dependent nuclease subunit B Machinery gene
  ACJWMD_RS08705 - 1840680..1842053 (-) 1374 WP_004183414.1 GHKL domain-containing protein -
  ACJWMD_RS08710 - 1842089..1843399 (-) 1311 WP_004183415.1 hypothetical protein -
  ACJWMD_RS08715 - 1843620..1845071 (-) 1452 WP_004183416.1 IS1182 family transposase -

Sequence

Protein


Download         Length: 1106 a.a.        Molecular weight: 126039.41 Da        Isoelectric Point: 4.8651

>NTDB_id=969867 ACJWMD_RS08700 WP_004183412.1 1837109..1840429(-) (rexB) [Streptococcus salivarius strain MRD6060]
MKLLYTDMSQDLTEILTEQATSYAQKGKRVFYIAPNALSFEKERKVLEYLPQSASFEITVTRFTQMARYFILNTSNPKTQ
LDDTGLAMIFYKVLSHMGDDELKVYGRLRKDSNFINQLVDLYKELQQANMTVLDLQHLDQVEKQEDLLRIFSAAQDLLLA
GDFDNQSKLSAFFKEITSGHLDKALSNTVLVIDGFTRFSAEEEALVALLNDKCHQIVIGTYTSQKAYSANFVYGNVYQAS
VDFLRTLAQTYKVTPDYVTTDKEGNPSFAHISRLLESRHDFSTIDEQLTAQDKQALQVWEVVNQKEEVAQVAKSIRQLLA
DGKRYKDILVLLGDEESYKLQVGQIFRKFDIPYYFGKEETMSSHPLVQFVDSLERIKRYNYRAEDLLNLIKSGLYGGFAQ
EDLDLFEYYVNFADIKGRHKFLSDFTANSRDKYDLDQLNALRSQLVEPLDKLLNSRKQKGSSLLKKLVVFLEAVQVPSKM
AALTGKASEAEKEQNEQVWKAFTQLLEQVETIFGEETLSVDDFLSILRSGMLACDYRTVPATVDVVNVKKYDLIQPHSAP
YVFALGMTQSHFPKVGQNKSLLSDEERSRINEATDEHRSLDIVTQSNSQRGHFVAMSLFNAASEQLVLSQPQILNETQDD
MSVYLKELLDLGLSLVEKGRNRFEAKGDQIGNYKDLLSTVIALNSSHLDADLDKETQTFWSVAVRYLRKRLDKDQVLIPN
VIDDVTTTKVDDQVMQLVFPREEPLKLSASALTTFYNNQYLYFLRYVLGLEELESIHPDARHHGTYLHRVFERVMGDSSS
ENFDDKLEKAIAQTNQEQPFEILYTEDQESRLSRQILEDIARSTASVLRDNAAVKVEREEAKFDLLLANSIKITGIIDRV
DRLTDGALGVVDYKSGKNVFDIQKFYNGLSPQLVTYLEALRQTYKVDADQLFGAMYLHMQDPQLNLAQFGLDKLAAQAHK
ELTYKGLFVASETEHLAGGNYDLQKTVTYDKEDLETLLEYNIKLFTGAAEVIRSGNFAVNPYTEDGKSVQGNQIKAITHF
EADRHMGQARKLLRLPSKGKKEAYLELMAKDEDDNEMQVAETIVPFPVTEQAVTVDKKDQEDNHVD

Nucleotide


Download         Length: 3321 bp        

>NTDB_id=969867 ACJWMD_RS08700 WP_004183412.1 1837109..1840429(-) (rexB) [Streptococcus salivarius strain MRD6060]
ATGAAATTACTTTATACGGATATGTCTCAGGATTTAACAGAAATTCTGACGGAGCAGGCAACCAGCTATGCTCAAAAGGG
AAAGAGGGTCTTTTATATTGCCCCTAATGCCCTGTCATTTGAGAAGGAGCGTAAGGTCTTGGAATACCTGCCTCAGTCAG
CATCCTTTGAGATTACGGTGACTCGTTTTACTCAGATGGCTAGATATTTCATTCTCAATACGAGCAACCCCAAAACGCAG
CTGGATGATACTGGTCTGGCCATGATTTTTTATAAGGTGTTGTCGCATATGGGCGATGATGAGCTCAAGGTTTATGGCCG
TTTGCGCAAGGATAGTAACTTTATTAATCAATTGGTAGACCTTTACAAAGAGTTGCAGCAGGCTAATATGACGGTTCTGG
ATTTGCAGCATTTGGATCAGGTTGAGAAACAAGAGGATTTGCTCAGGATTTTCAGTGCGGCTCAGGATCTCTTGTTGGCA
GGAGATTTTGACAATCAATCAAAACTTAGTGCCTTCTTCAAGGAAATTACCTCAGGACATCTGGATAAGGCACTGAGTAA
TACGGTTTTGGTCATTGATGGCTTTACGCGTTTCTCTGCCGAGGAGGAGGCCCTAGTTGCCCTCTTGAATGATAAGTGCC
ACCAAATTGTCATTGGGACTTATACCAGTCAAAAAGCTTATAGTGCTAACTTTGTTTACGGCAATGTTTATCAGGCTTCA
GTGGATTTTCTGAGAACTCTGGCTCAGACCTATAAGGTGACACCCGACTATGTGACGACAGACAAAGAGGGGAATCCTTC
TTTTGCACATATTAGCCGTCTTTTGGAGAGCCGTCATGATTTTAGTACGATTGACGAGCAGCTGACTGCTCAGGACAAGC
AAGCTTTGCAGGTTTGGGAAGTGGTCAACCAAAAGGAAGAAGTGGCTCAGGTTGCTAAGAGTATTCGTCAGTTGCTAGCA
GATGGCAAGCGCTATAAGGATATCTTGGTCTTGCTAGGTGATGAGGAGAGTTATAAGCTTCAGGTGGGTCAGATTTTTCG
AAAATTTGATATTCCCTATTATTTCGGTAAGGAAGAAACCATGTCTAGCCATCCTTTGGTGCAGTTTGTGGATTCCTTGG
AGCGGATCAAACGCTACAATTACCGTGCTGAGGATTTACTTAATCTCATAAAATCCGGTCTCTATGGTGGTTTTGCTCAA
GAGGATTTAGACCTTTTTGAGTATTATGTCAATTTTGCAGATATCAAGGGGCGTCACAAGTTCCTTTCTGATTTCACGGC
TAATAGTCGTGATAAGTATGATTTGGACCAGCTCAATGCCTTGAGGTCACAACTGGTAGAGCCTTTGGACAAGTTGCTTA
ACAGTCGCAAACAGAAGGGGTCTAGTCTGCTCAAAAAACTTGTGGTTTTTTTAGAGGCTGTGCAAGTGCCAAGTAAGATG
GCTGCTTTGACTGGCAAGGCCAGTGAGGCCGAAAAAGAGCAGAATGAACAGGTCTGGAAGGCTTTCACACAACTCTTGGA
GCAGGTTGAGACTATTTTTGGGGAAGAAACTCTGTCAGTGGACGACTTTTTGTCCATTTTGCGTTCAGGAATGTTGGCCT
GTGATTACCGTACGGTCCCAGCCACTGTCGATGTGGTTAATGTGAAGAAATACGATTTGATTCAACCACACTCTGCTCCT
TATGTTTTTGCCTTGGGAATGACCCAGTCGCATTTTCCAAAGGTAGGGCAAAATAAGAGTCTCCTGTCTGACGAGGAACG
TAGTCGTATCAATGAAGCTACGGACGAGCACAGAAGTTTGGATATTGTTACGCAGAGCAATAGCCAGCGGGGACATTTCG
TGGCTATGTCACTTTTTAATGCGGCTAGTGAACAATTGGTGCTTAGTCAGCCACAAATTCTCAATGAGACTCAAGATGAC
ATGTCGGTTTATTTGAAGGAGCTGCTTGACCTTGGTCTTTCTTTGGTTGAAAAGGGACGTAATCGTTTCGAGGCTAAGGG
TGACCAGATTGGGAACTACAAGGACCTTCTATCAACTGTCATCGCCCTTAACAGTAGCCATTTAGATGCTGATTTGGATA
AGGAAACGCAGACTTTCTGGTCAGTTGCTGTGCGTTATCTCCGTAAGCGACTTGATAAGGACCAAGTCTTGATTCCAAAT
GTGATTGACGATGTGACGACAACCAAGGTGGATGATCAAGTCATGCAGCTGGTCTTTCCGAGGGAAGAACCACTGAAATT
ATCAGCCTCGGCTCTGACGACCTTCTATAACAACCAATATCTTTATTTCTTGCGTTATGTTTTGGGACTTGAAGAGTTGG
AGTCCATCCATCCAGATGCTCGACACCACGGGACTTATTTGCACCGTGTCTTTGAGCGTGTTATGGGGGATTCTTCGTCA
GAAAACTTCGATGATAAATTGGAAAAGGCTATTGCTCAGACCAATCAGGAACAACCCTTTGAAATTCTCTATACAGAGGA
CCAAGAGAGTCGCTTGTCTCGTCAGATTTTGGAAGATATCGCCCGTTCAACTGCCAGTGTTTTGCGTGACAATGCGGCTG
TTAAGGTTGAGCGTGAGGAAGCCAAGTTTGATTTGCTCTTAGCAAATAGCATCAAGATTACAGGGATTATTGACCGTGTG
GACCGTTTAACGGATGGGGCTCTGGGTGTCGTTGACTACAAGTCAGGTAAAAATGTCTTTGACATTCAAAAATTCTACAA
TGGCCTCAGCCCACAGTTGGTAACCTATCTAGAAGCCCTTCGACAAACCTATAAAGTCGATGCTGATCAGCTTTTTGGTG
CCATGTATCTTCACATGCAGGACCCACAGCTTAACTTAGCTCAGTTTGGTCTGGATAAGCTAGCAGCTCAGGCTCATAAG
GAATTGACCTATAAGGGACTCTTTGTGGCTTCAGAGACGGAGCATCTGGCTGGTGGAAACTATGATTTACAAAAGACTGT
CACCTACGACAAGGAGGACCTAGAGACCTTGTTAGAATACAATATCAAGCTCTTTACAGGTGCTGCTGAAGTTATTAGAA
GCGGGAATTTTGCGGTCAATCCTTATACTGAGGATGGCAAGTCTGTTCAAGGGAATCAAATCAAGGCTATTACTCATTTT
GAGGCCGACCGCCACATGGGACAGGCTCGAAAACTCTTGCGTTTACCAAGTAAGGGCAAGAAGGAAGCCTATTTGGAGCT
GATGGCAAAAGATGAGGACGATAATGAGATGCAAGTTGCTGAAACTATCGTCCCCTTTCCAGTCACTGAACAAGCTGTGA
CAGTAGACAAAAAAGACCAGGAGGACAACCATGTTGACTAA

Domains

Predicted by InterProScan.

PD-(D/E)XK nuclease superfamily (PDDEXK_1)

(747-1023)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rexB Streptococcus pneumoniae R6

43.526

98.463

0.429