Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   ACJWMD_RS05715 Genome accession   NZ_CP177182
Coordinates   1227728..1229929 (-) Length   733 a.a.
NCBI ID   WP_004182661.1    Uniprot ID   -
Organism   Streptococcus salivarius strain MRD6060     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1222728..1234929
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACJWMD_RS05690 - 1223670..1224431 (-) 762 WP_004182656.1 hypothetical protein -
  ACJWMD_RS05695 nth 1224559..1225203 (-) 645 WP_004182657.1 endonuclease III -
  ACJWMD_RS05700 - 1225203..1225901 (-) 699 WP_004182658.1 DnaD domain-containing protein -
  ACJWMD_RS05705 metA 1225974..1226918 (-) 945 WP_004182659.1 homoserine O-acetyltransferase MetA -
  ACJWMD_RS05710 - 1227091..1227609 (-) 519 WP_004182660.1 adenine phosphoribosyltransferase -
  ACJWMD_RS05715 recJ 1227728..1229929 (-) 2202 WP_004182661.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  ACJWMD_RS05720 - 1230239..1230643 (-) 405 WP_004182662.1 GNAT family N-acetyltransferase -
  ACJWMD_RS05725 - 1230645..1230782 (-) 138 Protein_1077 class I SAM-dependent methyltransferase -
  ACJWMD_RS05730 - 1230854..1231621 (-) 768 WP_004182663.1 SDR family NAD(P)-dependent oxidoreductase -
  ACJWMD_RS05735 rnz 1231621..1232550 (-) 930 WP_002884122.1 ribonuclease Z -
  ACJWMD_RS05740 - 1232582..1233223 (-) 642 WP_004182664.1 cystathionine beta-lyase -
  ACJWMD_RS05745 hflX 1233216..1234454 (-) 1239 WP_004182665.1 GTPase HflX -

Sequence

Protein


Download         Length: 733 a.a.        Molecular weight: 82362.53 Da        Isoelectric Point: 4.3018

>NTDB_id=969841 ACJWMD_RS05715 WP_004182661.1 1227728..1229929(-) (recJ) [Streptococcus salivarius strain MRD6060]
MITSTYDWKINTKEPDAGFFKLAKEHGLAETAAKIAYERGVTTEEALEDFLKADLSHLHDPYLLHDMDKAVERIRRAIED
YEQILIYGDYDADGMTSASIMKETLEQMGAEVQVYLPNRFTDGYGPNESVYKYFIEQQGISLIVTVDNGVAGNEAIAYAQ
EQGVDVIVTDHHSMPAQLPDAYAIVHPEHPDADYPFKYLAGCGVAFKLATALLETIPTEMLDLVAIGTIADMVSLTDENR
IMVKVGLEILKTTERIGLQELLRISDVDPTTISEETVGFKLAPQLNALGRLDDPNPAIELLTGFDDEEAQAIALEINAKN
EERKEVVQKIFDEAMTMVDLDKPVQVLAKEGWHPGVLGIVAGRIMEQISQTVVVLNIEDGLAKGSARSLESINIFHALDD
HRDIFTAFGGHAGAAGMTLPEENLGQLSDILCHYVYDNDIDTSAKNTLNLDEELQLSELSLDTIKSLEKLAPFGMDNKKP
VFWLHDITVTQARTMGQNGAHLKFKVKQGKDSFDVVAFNKGNLLQEFQQAQGLELAVTLSVNVWNGQTMLQLMLEDARVD
GVQLFDFRSKNMALPEGVPTVEEAADTEPAVVLNTLPESATELKEWFEGKDFQAIYFKNSIKEAYYLTGYGTREQFARLY
KTIYQFPEFDVRYKLDELSHYLKIDKILLIKMIQIFDELDFVTIDNGVMTVNKEAEKREIEDSQIFQDLKRLVKFQELMA
LGTPQEIYDWLYK

Nucleotide


Download         Length: 2202 bp        

>NTDB_id=969841 ACJWMD_RS05715 WP_004182661.1 1227728..1229929(-) (recJ) [Streptococcus salivarius strain MRD6060]
ATGATTACATCAACGTATGATTGGAAAATAAACACAAAAGAGCCAGATGCTGGCTTTTTTAAACTTGCCAAAGAACATGG
GCTGGCAGAAACAGCAGCCAAGATTGCTTATGAACGTGGCGTGACGACAGAAGAGGCCCTTGAAGACTTTCTTAAGGCTG
ATCTATCACACCTTCATGACCCTTATCTTCTTCATGATATGGACAAGGCAGTGGAGCGCATCCGACGGGCCATCGAAGAT
TATGAGCAGATCCTGATCTACGGAGACTATGACGCGGACGGGATGACCTCGGCCTCCATTATGAAGGAAACCTTGGAGCA
GATGGGGGCAGAGGTGCAAGTCTACCTACCCAACCGCTTTACAGACGGCTATGGTCCCAATGAGAGTGTCTATAAATACT
TTATCGAGCAGCAAGGCATTTCCCTGATTGTCACGGTGGACAATGGGGTTGCGGGAAATGAAGCTATTGCTTATGCGCAA
GAGCAAGGTGTGGACGTTATCGTTACAGACCACCATAGTATGCCGGCACAGCTTCCAGATGCCTATGCCATTGTCCATCC
AGAGCATCCAGATGCCGATTATCCTTTTAAGTATTTGGCAGGATGTGGTGTAGCTTTCAAATTGGCAACTGCCCTTCTTG
AAACTATTCCTACAGAGATGTTGGACTTGGTAGCCATTGGTACCATTGCTGATATGGTTAGCCTAACGGATGAAAATCGT
ATTATGGTAAAGGTCGGCCTGGAAATTCTCAAGACTACTGAGCGTATTGGACTTCAAGAATTGCTACGCATCTCAGATGT
GGATCCAACAACGATTTCCGAAGAAACGGTAGGTTTTAAACTGGCTCCTCAACTCAATGCCTTGGGACGCTTAGATGATC
CAAATCCAGCCATTGAACTGTTGACCGGATTTGACGATGAGGAAGCACAAGCCATTGCTCTGGAAATCAATGCTAAAAAT
GAAGAACGTAAGGAAGTTGTTCAAAAAATCTTTGATGAAGCTATGACCATGGTAGACTTGGACAAACCAGTTCAGGTTTT
GGCCAAGGAAGGTTGGCATCCTGGTGTCCTCGGTATTGTGGCTGGGCGCATCATGGAGCAAATCAGCCAGACAGTAGTGG
TTTTGAATATTGAAGATGGCTTGGCAAAGGGTTCAGCCCGTAGTTTGGAATCTATCAATATCTTCCATGCCCTTGATGAC
CACCGAGACATCTTTACTGCTTTTGGAGGACATGCTGGAGCGGCTGGGATGACCCTTCCGGAGGAAAATCTTGGTCAACT
CTCAGATATTTTGTGTCATTATGTCTACGATAATGACATTGATACAAGTGCCAAAAATACGCTTAATTTAGACGAGGAGC
TCCAACTCAGTGAGCTTAGCTTGGATACCATTAAGAGCCTTGAAAAACTAGCACCTTTTGGTATGGATAATAAAAAGCCA
GTCTTTTGGCTACATGATATTACCGTTACTCAAGCTAGGACAATGGGACAAAATGGAGCCCATCTTAAGTTTAAGGTGAA
GCAAGGCAAGGATAGCTTTGACGTTGTCGCTTTTAATAAAGGTAATCTGCTTCAAGAATTTCAACAAGCTCAAGGTTTGG
AATTGGCAGTGACCTTGTCTGTTAATGTTTGGAATGGGCAGACAATGCTACAGCTCATGCTAGAAGATGCGCGTGTAGAT
GGTGTTCAATTATTTGATTTTCGCTCAAAAAATATGGCACTGCCTGAAGGCGTACCAACGGTAGAAGAAGCAGCAGACAC
AGAGCCTGCGGTTGTCCTCAACACCCTACCTGAATCAGCGACAGAATTAAAAGAGTGGTTTGAAGGTAAAGATTTCCAGG
CTATCTATTTTAAAAATAGCATTAAGGAAGCCTATTATCTGACAGGTTATGGAACAAGAGAGCAATTTGCAAGGCTCTAT
AAAACCATTTATCAATTCCCAGAATTCGATGTCCGCTATAAACTGGATGAACTCAGTCATTACCTTAAAATCGACAAGAT
TCTCCTGATTAAGATGATTCAAATCTTTGATGAATTGGATTTTGTGACTATTGATAATGGTGTTATGACAGTCAATAAAG
AAGCTGAAAAACGTGAGATTGAGGACAGTCAGATTTTCCAAGATCTGAAACGACTAGTTAAGTTCCAAGAACTCATGGCT
TTAGGAACACCACAGGAAATTTATGATTGGCTGTATAAGTAG

Domains

Predicted by InterProScan.

RecJ OB domain (RecJ_OB)

(451-556)

DHHA1 domain (DHHA1)

(317-431)

DHH family (DHH)

(83-228)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(585-731)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Streptococcus pneumoniae strain D39V

67.799

100

0.681
  recJ Bacillus subtilis subsp. subtilis str. 168

38.442

100

0.411