Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   MHI52_RS27765 Genome accession   NZ_CP150295
Coordinates   6278799..6280166 (-) Length   455 a.a.
NCBI ID   WP_036671578.1    Uniprot ID   A0AAN4L8U6
Organism   Paenibacillus sp. FSL H8-0283     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6273799..6285166
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MHI52_RS27735 (MHI52_27665) ispF 6273900..6274376 (-) 477 WP_017692052.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  MHI52_RS27740 (MHI52_27670) ispD 6274373..6275068 (-) 696 WP_405157998.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  MHI52_RS27745 (MHI52_27675) - 6275151..6276236 (-) 1086 WP_047841132.1 PIN/TRAM domain-containing protein -
  MHI52_RS27750 (MHI52_27680) - 6276410..6276805 (+) 396 WP_017692049.1 hypothetical protein -
  MHI52_RS27755 (MHI52_27685) pssA 6276932..6277663 (-) 732 WP_017692048.1 CDP-diacylglycerol--serine O-phosphatidyltransferase -
  MHI52_RS27760 (MHI52_27690) disA 6277709..6278785 (-) 1077 WP_036607144.1 DNA integrity scanning diadenylate cyclase DisA -
  MHI52_RS27765 (MHI52_27695) radA 6278799..6280166 (-) 1368 WP_036671578.1 DNA repair protein RadA Machinery gene
  MHI52_RS27770 (MHI52_27700) - 6280439..6282901 (-) 2463 WP_036607223.1 ATP-dependent Clp protease ATP-binding subunit -
  MHI52_RS27775 (MHI52_27705) - 6283087..6284157 (-) 1071 WP_405157999.1 protein arginine kinase -
  MHI52_RS27780 (MHI52_27710) - 6284186..6284710 (-) 525 WP_036607138.1 UvrB/UvrC motif-containing protein -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 49459.06 Da        Isoelectric Point: 6.9994

>NTDB_id=969822 MHI52_RS27765 WP_036671578.1 6278799..6280166(-) (radA) [Paenibacillus sp. FSL H8-0283]
MAKVKTKFQCTECGYEAPKWYGKCPGCQSWNSMVEETETVVKTQGRNSPLFDSKDKPLPIIDIDSGQEPRVQTGIGELNR
VLGGGIVPGSLVLVGGDPGIGKSTLMLQTSHALTHSGLRVLYVSGEESVKQTKLRADRLGALSAELYVLCETNMERVEEA
VDQIQPHFLVIDSIQTVYLPEVTSAPGSVAQVRECTSRFMRIAKGRGIATVLVGHVTKEGAIAGPRMLEHMVDCVLYFEG
ERHHTYRLLRAVKNRFGSTNEIGIFEMGEDGLREVGNPSELFLSERPLGVAGSTVVASMEGTRPLLVELQALISTTHFPS
PRRMATGVDLHRLNLIIAVLEKRMGMFLQTQDAYLNVAGGVRLDEPAVDLAVAVSIASSLRDVPTKPDDVIFGEIGLTGE
VRAVSRAEQRVKEAAKLGFKRVILPEKSLKGWKHPRGIQLIGVNTVADALAVALD

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=969822 MHI52_RS27765 WP_036671578.1 6278799..6280166(-) (radA) [Paenibacillus sp. FSL H8-0283]
GTGGCCAAAGTTAAAACCAAGTTTCAATGTACGGAATGCGGCTATGAAGCCCCCAAGTGGTACGGTAAGTGTCCGGGTTG
TCAGTCATGGAATTCAATGGTGGAAGAAACAGAGACGGTGGTCAAAACACAAGGGAGAAATTCTCCTCTGTTTGACAGTA
AAGATAAACCGCTTCCTATCATAGATATAGATAGCGGTCAGGAACCGCGTGTACAGACTGGAATCGGAGAGTTGAACCGG
GTATTGGGTGGCGGAATCGTTCCGGGTTCACTCGTTCTGGTGGGCGGAGATCCGGGTATTGGTAAATCAACGTTGATGTT
GCAGACGTCTCATGCTTTGACGCATTCGGGTTTGCGTGTGTTATATGTTTCCGGTGAGGAATCAGTAAAGCAAACCAAAT
TGCGGGCAGACCGTCTCGGGGCACTCTCTGCCGAGTTGTATGTACTGTGTGAAACCAATATGGAACGTGTAGAGGAAGCG
GTGGATCAGATCCAGCCGCATTTTCTGGTCATCGACTCCATTCAGACGGTATATCTTCCCGAAGTTACCAGTGCGCCTGG
TAGTGTTGCACAGGTAAGGGAATGTACGTCAAGGTTCATGCGGATTGCCAAAGGCAGAGGCATTGCAACGGTTCTTGTGG
GGCATGTTACCAAAGAAGGTGCCATTGCCGGTCCACGTATGTTAGAACATATGGTGGATTGCGTGCTTTATTTTGAAGGA
GAACGGCATCATACGTATCGCCTGTTGCGTGCGGTGAAGAACCGTTTTGGTTCCACCAATGAGATTGGTATTTTTGAAAT
GGGCGAGGATGGACTTCGTGAGGTGGGCAATCCGTCCGAACTCTTTTTGTCGGAACGTCCACTGGGTGTAGCAGGTTCAA
CGGTAGTTGCCAGTATGGAGGGGACACGTCCTCTGCTCGTGGAATTACAGGCGTTGATCTCAACCACCCATTTCCCTTCT
CCCCGCCGTATGGCAACAGGGGTAGATCTGCATCGATTAAATCTGATCATTGCAGTGCTGGAGAAACGGATGGGGATGTT
TTTACAGACCCAGGATGCGTATCTGAACGTGGCTGGTGGAGTACGGTTGGATGAGCCCGCTGTAGACTTGGCGGTTGCCG
TCAGCATTGCATCCAGTTTGAGAGATGTACCGACCAAGCCGGACGACGTCATCTTTGGCGAGATCGGTCTGACAGGTGAA
GTTCGAGCCGTATCACGGGCCGAACAACGAGTGAAGGAAGCCGCAAAGCTGGGCTTCAAACGAGTCATTTTACCAGAAAA
AAGCTTAAAGGGCTGGAAACATCCTCGCGGGATACAACTGATCGGTGTGAATACCGTGGCAGATGCACTAGCGGTTGCTT
TAGATTAG

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(349-427)

AAA domain (AAA_25)

(77-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

65.284

100

0.657
  radA Streptococcus pneumoniae Rx1

59.333

98.901

0.587
  radA Streptococcus pneumoniae D39

59.333

98.901

0.587
  radA Streptococcus pneumoniae R6

59.333

98.901

0.587
  radA Streptococcus pneumoniae TIGR4

59.333

98.901

0.587
  radA Streptococcus mitis NCTC 12261

59.333

98.901

0.587
  radA Streptococcus mitis SK321

59.333

98.901

0.587

Multiple sequence alignment