Detailed information    

insolico Bioinformatically predicted

Overview

Name   xerS   Type   Machinery gene
Locus tag   ACJWMC_RS10905 Genome accession   NZ_CP177181
Coordinates   2299470..2300543 (+) Length   357 a.a.
NCBI ID   WP_002892342.1    Uniprot ID   J7T4B2
Organism   Streptococcus salivarius strain MRD1919     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2294470..2305543
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACJWMC_RS10885 - 2295704..2296405 (+) 702 WP_002892333.1 thioesterase II family protein -
  ACJWMC_RS10890 - 2296419..2297312 (+) 894 WP_002892335.1 ACP S-malonyltransferase -
  ACJWMC_RS10895 - 2297315..2297971 (+) 657 WP_002892337.1 4'-phosphopantetheinyl transferase family protein -
  ACJWMC_RS10900 - 2298077..2299244 (+) 1168 Protein_2096 IS256 family transposase -
  ACJWMC_RS10905 xerS 2299470..2300543 (+) 1074 WP_002892342.1 tyrosine recombinase XerS Machinery gene
  ACJWMC_RS10910 - 2300756..2301325 (+) 570 WP_002892344.1 hypothetical protein -
  ACJWMC_RS10915 - 2301410..2301586 (+) 177 WP_002892345.1 hypothetical protein -
  ACJWMC_RS10920 - 2301631..2301990 (-) 360 WP_002892347.1 hypothetical protein -
  ACJWMC_RS10925 - 2301987..2303400 (-) 1414 Protein_2101 Y-family DNA polymerase -
  ACJWMC_RS10930 - 2303580..2303915 (-) 336 WP_002892350.1 hypothetical protein -
  ACJWMC_RS10935 - 2304615..2305166 (-) 552 Protein_2103 transposase -

Sequence

Protein


Download         Length: 357 a.a.        Molecular weight: 41418.71 Da        Isoelectric Point: 9.6393

>NTDB_id=969779 ACJWMC_RS10905 WP_002892342.1 2299470..2300543(+) (xerS) [Streptococcus salivarius strain MRD1919]
MKQETLMKNINGLLEIMPWYVKEYYQAKLVIPYSYKTLYEYLKEYRRFFEWLIRDHEKLGKTARYADYDTIADVHIDELA
HLPKSIIEAYFVYLRENTERRSISEVSIVRTKDALSSLFKYLTQETEDDEGEPYFYRNVMVKVKIKKPKDTLASRADNMK
EKLFLNDTQSFLDYIDNEHEKKISKRAQVSFVKNKERDLAVIALLLSTGVRLSELVNLDMQDVNLATRTITVIRKGGKKD
VVNIAPFGIPYIERYLEIRKGRYAASDSDKAFFLTTQNKVPARLGTRSVELLVKKLSTAYGKPTTPHKLRHTLATRLYEQ
TKDSLLVSQQLGHKGTAMVEVYAHVAAETTKEALSDL

Nucleotide


Download         Length: 1074 bp        

>NTDB_id=969779 ACJWMC_RS10905 WP_002892342.1 2299470..2300543(+) (xerS) [Streptococcus salivarius strain MRD1919]
ATGAAACAAGAAACACTAATGAAAAATATAAACGGGTTGCTTGAGATTATGCCTTGGTATGTTAAGGAATATTATCAAGC
AAAGCTCGTAATTCCATATAGCTATAAGACACTGTATGAGTACTTAAAGGAATATAGACGATTTTTTGAATGGTTGATTA
GAGATCATGAGAAATTGGGTAAAACCGCACGATACGCAGATTATGATACGATTGCCGATGTTCATATTGATGAGCTGGCC
CATTTACCAAAGTCTATTATCGAAGCTTATTTTGTCTATCTTCGTGAAAATACTGAGCGTCGTTCAATCTCTGAAGTCAG
CATTGTTCGGACTAAGGATGCTCTCTCAAGTTTGTTTAAGTATCTTACTCAAGAAACTGAGGATGACGAGGGTGAGCCTT
ATTTTTACCGAAATGTCATGGTTAAGGTCAAAATCAAGAAACCTAAAGATACCTTGGCTAGTCGTGCTGATAACATGAAA
GAAAAACTCTTTTTAAATGATACACAGTCTTTCTTGGACTATATCGATAATGAACATGAAAAGAAAATCTCAAAACGTGC
CCAGGTATCCTTTGTCAAAAATAAAGAGCGTGATCTTGCTGTCATAGCACTTCTACTCTCTACTGGAGTCCGGTTATCTG
AATTAGTGAACCTAGATATGCAAGATGTCAATCTAGCCACAAGAACAATTACAGTTATCCGAAAAGGTGGGAAAAAGGAC
GTTGTAAATATCGCTCCATTTGGCATACCTTATATCGAGCGTTATTTAGAAATTAGGAAGGGACGCTACGCAGCAAGTGA
TTCAGATAAAGCATTCTTCTTAACGACTCAGAATAAAGTGCCTGCAAGGCTTGGCACACGTTCTGTCGAGCTTTTGGTGA
AGAAGTTATCTACCGCCTATGGTAAGCCTACTACTCCTCACAAACTGCGACACACACTTGCGACACGTCTATATGAGCAA
ACAAAAGACAGTCTCCTGGTCTCCCAACAATTGGGACACAAGGGGACTGCAATGGTAGAGGTTTATGCACACGTAGCTGC
AGAGACGACTAAGGAAGCACTGAGTGACTTGTAG

Domains

Predicted by InterProScan.

Phage integrase family (Phage_integrase)

(182-347)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB J7T4B2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xerS Streptococcus pneumoniae R6

52.747

100

0.538