Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   MHI43_RS29325 Genome accession   NZ_CP150293
Coordinates   6467094..6468461 (-) Length   455 a.a.
NCBI ID   WP_009594669.1    Uniprot ID   A0A1R1AQC1
Organism   Paenibacillus sp. FSL H8-0457     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6462094..6473461
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MHI43_RS29300 (MHI43_29300) ispD 6462556..6463251 (-) 696 WP_015737635.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  MHI43_RS29305 (MHI43_29305) - 6463329..6464417 (-) 1089 WP_015737636.1 PIN/TRAM domain-containing protein -
  MHI43_RS29310 (MHI43_29310) - 6464698..6465093 (+) 396 WP_009594665.1 hypothetical protein -
  MHI43_RS29315 (MHI43_29315) pssA 6465220..6465954 (-) 735 WP_228468840.1 CDP-diacylglycerol--serine O-phosphatidyltransferase -
  MHI43_RS29320 (MHI43_29320) disA 6466004..6467080 (-) 1077 WP_009594677.1 DNA integrity scanning diadenylate cyclase DisA -
  MHI43_RS29325 (MHI43_29325) radA 6467094..6468461 (-) 1368 WP_009594669.1 DNA repair protein RadA Machinery gene
  MHI43_RS29330 (MHI43_29330) clpC 6468941..6471397 (-) 2457 WP_015737638.1 ATP-dependent protease ATP-binding subunit ClpC -
  MHI43_RS29335 (MHI43_29335) - 6471517..6472581 (-) 1065 WP_036662763.1 protein arginine kinase -
  MHI43_RS29340 (MHI43_29340) - 6472620..6473144 (-) 525 WP_009594667.1 hypothetical protein -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 49595.35 Da        Isoelectric Point: 7.4121

>NTDB_id=969773 MHI43_RS29325 WP_009594669.1 6467094..6468461(-) (radA) [Paenibacillus sp. FSL H8-0457]
MAKTKTKFFCTECGYEAPKWFGKCPGCQSWNSMVEETETVIKTQGMNSPLFHSKEKPLSIINIESGKEPRIQTGIAELNR
VLGGGLVPGSLVLVGGDPGIGKSTLLLQASNRLAQNGIRVLYISGEESVRQTKLRADRLGALSPELFVLCETNLESIEEA
IENVQPGFVVIDSIQTVYLPEVTSAPGSVSQVRECTARFMRLAKVKGIATVLVGHVTKEGAIAGPRMLEHMVDCVLYFEG
ERHHTYRLLRAVKNRFGSTNEIGIFEMGEDGLREVGNPSELFLSERPLGVAGSTVVASMEGTRPVLVELQALISTTHFPS
PRRMGTGVDHHRMNLIIAVLEKRMGMYLQTQDAYLNVAGGVKLDEPAVDLAIAVSIASSFRDIPTKPYDVIFGEVGLTGE
VRAVSRAEQRVREAEKLGFKRVLMPEKSLKGWKHPKGIQIIGVNTVADALAVALD

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=969773 MHI43_RS29325 WP_009594669.1 6467094..6468461(-) (radA) [Paenibacillus sp. FSL H8-0457]
ATGGCAAAAACTAAGACGAAATTTTTCTGTACCGAATGCGGCTATGAAGCGCCCAAATGGTTCGGAAAATGTCCGGGCTG
CCAATCATGGAATTCCATGGTAGAGGAGACCGAGACGGTAATCAAGACCCAGGGGATGAATTCCCCTCTTTTTCATAGTA
AAGAAAAACCCCTTTCGATCATAAATATAGAAAGCGGTAAAGAACCCAGAATCCAGACGGGCATTGCGGAATTGAACCGG
GTGCTCGGGGGCGGGCTGGTCCCGGGCTCGCTCGTGCTAGTCGGCGGCGATCCCGGCATCGGGAAATCCACGCTCCTGCT
TCAAGCCTCCAACCGACTGGCCCAGAACGGCATTCGCGTTCTGTACATTTCCGGTGAGGAATCCGTGCGCCAGACCAAAC
TGCGCGCTGACCGGCTCGGGGCGCTGTCCCCGGAGCTGTTTGTCCTCTGCGAAACCAATCTGGAATCGATCGAGGAAGCC
ATTGAGAACGTACAGCCTGGCTTCGTTGTCATCGACTCCATTCAGACGGTGTACTTGCCTGAGGTAACCAGCGCGCCGGG
CAGCGTATCCCAGGTTCGGGAATGCACGGCCCGCTTTATGCGGCTGGCGAAGGTGAAAGGCATTGCGACCGTCCTTGTCG
GACATGTGACAAAAGAAGGCGCCATTGCAGGTCCAAGGATGCTGGAGCACATGGTGGATTGTGTGCTTTATTTTGAAGGA
GAGCGTCATCATACTTACCGCTTGCTTCGCGCGGTGAAGAATCGTTTCGGTTCGACGAATGAGATTGGCATTTTTGAGAT
GGGTGAGGATGGGCTTCGGGAAGTCGGGAATCCATCGGAGCTCTTTTTATCTGAACGGCCTTTGGGCGTAGCGGGTTCGA
CCGTAGTTGCAAGCATGGAGGGTACGCGCCCGGTTCTGGTAGAGCTGCAGGCGCTCATCTCCACGACGCACTTCCCGTCA
CCGCGCCGGATGGGCACAGGGGTGGACCATCACCGCATGAACCTGATCATTGCCGTGCTGGAGAAACGGATGGGGATGTA
CCTGCAAACCCAAGACGCCTACCTGAACGTAGCGGGCGGCGTGAAGCTCGATGAACCTGCGGTGGATCTGGCCATAGCGG
TCAGTATCGCATCCAGCTTCCGCGACATACCGACCAAGCCGTACGACGTTATTTTTGGCGAGGTGGGGCTGACCGGCGAG
GTTCGCGCCGTTTCAAGAGCGGAGCAGAGGGTAAGAGAAGCCGAGAAGCTGGGTTTTAAGCGCGTTCTCATGCCGGAGAA
GAGTTTGAAGGGATGGAAGCATCCGAAAGGAATACAAATTATCGGAGTCAACACCGTTGCAGATGCATTAGCGGTTGCGT
TAGATTAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(344-427)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-35)

AAA domain (AAA_25)

(70-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1R1AQC1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

66.885

100

0.675
  radA Streptococcus pneumoniae Rx1

59.111

98.901

0.585
  radA Streptococcus pneumoniae D39

59.111

98.901

0.585
  radA Streptococcus pneumoniae R6

59.111

98.901

0.585
  radA Streptococcus pneumoniae TIGR4

59.111

98.901

0.585
  radA Streptococcus mitis NCTC 12261

59.111

98.901

0.585
  radA Streptococcus mitis SK321

58.889

98.901

0.582

Multiple sequence alignment