Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   MHI43_RS26765 Genome accession   NZ_CP150293
Coordinates   5970516..5970956 (-) Length   146 a.a.
NCBI ID   WP_015737282.1    Uniprot ID   -
Organism   Paenibacillus sp. FSL H8-0457     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 5965516..5975956
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MHI43_RS26725 (MHI43_26725) - 5965795..5966052 (+) 258 WP_235201878.1 hypothetical protein -
  MHI43_RS26730 (MHI43_26730) - 5966227..5966439 (-) 213 WP_144374278.1 hypothetical protein -
  MHI43_RS26735 (MHI43_26735) - 5966496..5966594 (-) 99 WP_015737277.1 YjcZ family sporulation protein -
  MHI43_RS26740 (MHI43_26740) - 5966725..5967114 (-) 390 WP_015737278.1 YmaF family protein -
  MHI43_RS26745 (MHI43_26745) - 5967135..5967896 (-) 762 WP_235201881.1 DUF2935 domain-containing protein -
  MHI43_RS26750 (MHI43_26750) - 5968080..5969018 (-) 939 WP_015737280.1 LysR family transcriptional regulator -
  MHI43_RS26755 (MHI43_26755) - 5969158..5969796 (-) 639 WP_015737281.1 HD domain-containing protein -
  MHI43_RS26760 (MHI43_26760) - 5969986..5970141 (-) 156 WP_341283181.1 hypothetical protein -
  MHI43_RS26765 (MHI43_26765) nucA/comI 5970516..5970956 (-) 441 WP_015737282.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  MHI43_RS26770 (MHI43_26770) - 5971183..5971452 (-) 270 WP_341283182.1 hypothetical protein -
  MHI43_RS26775 (MHI43_26775) groL 5971615..5973243 (-) 1629 WP_009593977.1 chaperonin GroEL -
  MHI43_RS26780 (MHI43_26780) groES 5973305..5973586 (-) 282 WP_006212454.1 co-chaperone GroES -
  MHI43_RS26785 (MHI43_26785) - 5973977..5974795 (-) 819 WP_015737284.1 nucleotidyltransferase domain-containing protein -

Sequence

Protein


Download         Length: 146 a.a.        Molecular weight: 16189.21 Da        Isoelectric Point: 4.3837

>NTDB_id=969771 MHI43_RS26765 WP_015737282.1 5970516..5970956(-) (nucA/comI) [Paenibacillus sp. FSL H8-0457]
MKKLFMKFGTVVLSLLLVWLVLNYFPELDDSDVNPPIPGTVVELEFPADKYPETADHIKKAIESGHSDICTIDRTGAEDN
RSSSLKGIPTKKGYDRDEWPMAMCAEGGDGASIEYIDPSDNRGAGSWVGNYLEGYPDGTQVHFIFR

Nucleotide


Download         Length: 441 bp        

>NTDB_id=969771 MHI43_RS26765 WP_015737282.1 5970516..5970956(-) (nucA/comI) [Paenibacillus sp. FSL H8-0457]
ATGAAAAAGTTATTCATGAAATTTGGAACAGTGGTCTTATCTTTATTACTGGTTTGGTTGGTCCTTAATTATTTTCCGGA
GTTAGATGACAGTGATGTAAACCCACCAATACCGGGTACCGTTGTCGAATTAGAGTTTCCAGCGGATAAATATCCTGAGA
CGGCGGATCACATAAAAAAGGCCATTGAATCCGGCCATTCCGATATTTGTACCATTGATCGAACTGGTGCAGAGGATAAC
AGGAGTTCTTCACTAAAGGGAATCCCTACGAAAAAAGGATATGATCGCGATGAGTGGCCGATGGCCATGTGTGCCGAAGG
AGGAGACGGTGCAAGTATCGAATACATAGATCCATCTGACAATCGAGGAGCAGGCAGCTGGGTAGGTAACTATTTGGAGG
GATACCCGGACGGTACCCAAGTACATTTCATTTTTAGATAG

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(51-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

68.932

70.548

0.486

Multiple sequence alignment