Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   MHI43_RS21830 Genome accession   NZ_CP150293
Coordinates   4917265..4918218 (-) Length   317 a.a.
NCBI ID   WP_015736422.1    Uniprot ID   -
Organism   Paenibacillus sp. FSL H8-0457     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4912265..4923218
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MHI43_RS21810 (MHI43_21810) - 4912785..4914209 (-) 1425 WP_036664039.1 NAD-dependent succinate-semialdehyde dehydrogenase -
  MHI43_RS21815 (MHI43_21815) - 4914396..4915367 (-) 972 WP_036664040.1 siderophore ABC transporter substrate-binding protein -
  MHI43_RS21820 (MHI43_21820) - 4915573..4916331 (-) 759 WP_036664042.1 ABC transporter ATP-binding protein -
  MHI43_RS21825 (MHI43_21825) - 4916328..4917275 (-) 948 WP_036664044.1 iron chelate uptake ABC transporter family permease subunit -
  MHI43_RS21830 (MHI43_21830) ceuB 4917265..4918218 (-) 954 WP_015736422.1 ABC transporter permease Machinery gene
  MHI43_RS21835 (MHI43_21835) - 4918741..4919343 (+) 603 WP_036664046.1 nitroreductase family protein -
  MHI43_RS21840 (MHI43_21840) - 4919714..4920316 (+) 603 WP_036664048.1 YkoF family thiamine/hydroxymethylpyrimidine-binding protein -
  MHI43_RS21845 (MHI43_21845) - 4920357..4920452 (-) 96 WP_015736424.1 hypothetical protein -
  MHI43_RS21850 (MHI43_21850) - 4920569..4921267 (-) 699 WP_036664051.1 nucleotidyltransferase domain-containing protein -
  MHI43_RS21855 (MHI43_21855) - 4921410..4922132 (+) 723 WP_015736426.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 34945.36 Da        Isoelectric Point: 9.9368

>NTDB_id=969768 MHI43_RS21830 WP_015736422.1 4917265..4918218(-) (ceuB) [Paenibacillus sp. FSL H8-0457]
MKIRYLFAAVVVLSIISLFIGVKDISPLELFSMTEQQQHIMLVSRIPRLVSLILAGVSMSICGLIMQQLSRNKFVSPTTA
GTMDSARLGILVAMLVFTTSGPLIKMLVAFVFALAGTFIFMKILDRIKFKDAIFIPLVGLMFGNIVSSVATFFAYKYDLI
QNMSAWLQGDFSMIMKGQYEMLYLSIPLVILAYLFANKFTVAGMGEEFATNLGLHYRRVVNLGLVIVALVTASVVLTVGV
IPFLGLIIPNIVSLYLGDHLKKSLSHTALLGAGFVLFCDILGRIIIYPYEIPISLTVGVLGSGIFIFLLMRRKAYDL

Nucleotide


Download         Length: 954 bp        

>NTDB_id=969768 MHI43_RS21830 WP_015736422.1 4917265..4918218(-) (ceuB) [Paenibacillus sp. FSL H8-0457]
ATGAAGATTAGATACTTATTCGCAGCCGTTGTGGTACTCTCCATAATCTCGTTATTTATTGGAGTTAAAGATATCTCGCC
ACTGGAACTGTTCTCGATGACAGAACAACAACAGCATATTATGCTTGTAAGCCGGATTCCACGGCTTGTCAGCCTCATCT
TGGCGGGTGTCAGCATGAGTATCTGTGGATTGATCATGCAGCAGCTCAGCCGCAACAAGTTCGTATCGCCGACGACGGCG
GGCACCATGGACTCCGCCAGATTGGGGATCTTGGTCGCCATGCTCGTCTTTACGACAAGCGGCCCGCTTATCAAAATGCT
CGTGGCATTCGTATTCGCGCTGGCAGGAACCTTTATCTTCATGAAGATACTGGATCGGATCAAGTTCAAGGACGCGATCT
TCATCCCGCTGGTAGGGCTTATGTTCGGTAATATCGTCAGCTCGGTCGCGACCTTCTTTGCCTACAAATATGATCTTATA
CAGAATATGTCGGCTTGGCTGCAGGGCGATTTCTCCATGATCATGAAGGGCCAATATGAAATGCTGTATCTCAGTATCCC
GCTTGTGATTCTGGCTTACCTGTTTGCCAACAAGTTTACGGTAGCCGGAATGGGAGAGGAATTCGCAACCAACCTGGGAC
TTCATTATCGGCGAGTCGTGAACCTGGGATTGGTCATCGTTGCGCTGGTTACGGCTTCCGTTGTGCTGACCGTCGGCGTG
ATTCCGTTCCTTGGTCTGATCATACCTAATATTGTCAGTCTGTACTTAGGGGACCACTTGAAAAAAAGCCTTTCGCATAC
CGCGTTGCTGGGGGCCGGGTTCGTACTGTTCTGTGACATCCTTGGCCGGATCATCATTTATCCCTACGAAATTCCGATTA
GTCTGACCGTGGGCGTACTCGGAAGCGGTATATTCATTTTCTTACTGATGAGGAGAAAGGCTTATGACTTATAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

53.968

99.369

0.536

Multiple sequence alignment