Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   MHB44_RS15230 Genome accession   NZ_CP150292
Coordinates   3187446..3189878 (-) Length   810 a.a.
NCBI ID   WP_341299867.1    Uniprot ID   -
Organism   Lysinibacillus sp. FSL H8-0500     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3182446..3194878
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MHB44_RS15225 (MHB44_15225) hpaB 3185878..3187314 (-) 1437 WP_341299866.1 4-hydroxyphenylacetate 3-monooxygenase, oxygenase component -
  MHB44_RS15230 (MHB44_15230) recD2 3187446..3189878 (-) 2433 WP_341299867.1 ATP-dependent RecD-like DNA helicase Machinery gene
  MHB44_RS15235 (MHB44_15235) hisA 3190147..3190914 (+) 768 WP_341299868.1 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase -
  MHB44_RS15240 (MHB44_15240) - 3190911..3191198 (+) 288 WP_053996252.1 hypothetical protein -
  MHB44_RS15245 (MHB44_15245) - 3191392..3192111 (+) 720 WP_341299869.1 GTP pyrophosphokinase family protein -
  MHB44_RS15250 (MHB44_15250) - 3192206..3193648 (-) 1443 WP_341299870.1 DHA2 family efflux MFS transporter permease subunit -
  MHB44_RS15255 (MHB44_15255) - 3193838..3194497 (-) 660 WP_341299871.1 tetratricopeptide repeat protein -

Sequence

Protein


Download         Length: 810 a.a.        Molecular weight: 90641.84 Da        Isoelectric Point: 4.8758

>NTDB_id=969739 MHB44_RS15230 WP_341299867.1 3187446..3189878(-) (recD2) [Lysinibacillus sp. FSL H8-0500]
MTDQFDLFELNKFFILGRPIVSIFHNAQNMYSIVRVKIQETNLQYEDKEIIVVGYFPPLQMDEQYRFTGNLKQHPKYGVQ
FQIETFAKEVPATEQGIIHYLSSDLFVGIGKKTAETIVDKLGANALRLILEDAGALDIVPRLSADKKEIIRSTIEQNLGL
ERVMIQLNEWGFGPQLGMKIYQTYRTEAIELLMANPYRLIEDIEGIGFFRADELGAKLGITGNHPDRVKAAILHILNTAA
LSDGHVYLDAEHVLPLVKDMLEQSQQQEIPFEAISQACIELREESKICGEETRLYLPSLYFSEIGIASKIVTLIERNREA
EHFSKDEIRKAIGETEERLHVTYAETQANAIEQALNSAVMILTGGPGTGKTTVVRGIVEVYAQLHGLSLNPKEYAQKEQP
FPIILCAPTGRAAKRLAESTELPAMTIHRLLGFTGQEKEEETEREVTGKLIIVDEMSMVDTWLAHQLLKSLHEDVQVVFV
GDQDQLPPVGPGQVLKDLLASKQLPTVELTDVYRQAEGSTIIELAHQIKKGTIPNNLTMKTTDRSFIKASADQVANVVTQ
VVKSAVAKGQEIRNIQVLAPMYKGPAGIDNLNKMIQELINPNDTGTRKELVFGDTTYRIKDKVLQLVNQPESNVFNGDMG
EVVSIIKAKETIEKQDLLVVSFDGIEVTYQRGDLNQLTLAYCCSIHKSQGSEFQTVIMPVVRGYSKMLRRNLLYTGITRA
KNFLILCGEADVLADGLQRTDDLQRFTSLRARLNPMEVAEELVEVEAVSVADGDRQESLSTDYKLTVETAPTIHPLIGMD
HVSPYDFLEN

Nucleotide


Download         Length: 2433 bp        

>NTDB_id=969739 MHB44_RS15230 WP_341299867.1 3187446..3189878(-) (recD2) [Lysinibacillus sp. FSL H8-0500]
ATGACAGACCAATTCGATTTATTTGAGCTTAATAAGTTTTTTATACTCGGACGTCCAATCGTCTCTATTTTTCATAATGC
CCAAAATATGTATTCCATTGTGCGCGTGAAAATTCAAGAGACAAACTTGCAATATGAAGATAAAGAAATTATTGTGGTTG
GCTATTTTCCCCCGCTACAAATGGATGAGCAATATCGTTTTACAGGTAACTTAAAACAGCATCCAAAGTATGGTGTGCAA
TTTCAAATTGAGACATTTGCGAAGGAAGTACCAGCAACTGAACAAGGAATTATCCATTATTTATCGAGCGATTTATTTGT
GGGCATTGGTAAAAAAACAGCCGAAACGATTGTTGATAAGCTTGGAGCGAATGCACTGAGACTGATTTTAGAGGATGCTG
GTGCACTAGATATTGTGCCGCGCCTATCCGCAGATAAAAAAGAGATTATTCGTAGCACCATCGAACAAAATCTCGGCTTA
GAGCGTGTAATGATTCAGCTTAATGAGTGGGGATTTGGCCCACAGCTTGGTATGAAAATTTATCAAACCTATCGTACAGA
GGCGATAGAGCTGCTAATGGCAAATCCATACCGTCTTATTGAAGATATCGAAGGAATTGGTTTCTTTCGAGCAGATGAGT
TAGGTGCCAAGTTAGGGATTACAGGTAATCATCCTGACCGTGTCAAGGCAGCTATTTTGCATATATTAAATACAGCGGCT
TTATCGGATGGTCATGTGTATTTGGATGCAGAACATGTTTTACCACTTGTCAAGGATATGCTGGAGCAGAGTCAACAGCA
GGAAATTCCGTTTGAGGCTATTTCACAGGCATGTATAGAGCTGCGAGAAGAAAGCAAGATTTGTGGTGAGGAAACAAGAT
TATATTTGCCTTCTCTGTATTTTTCAGAGATAGGTATTGCCTCTAAAATCGTAACCCTTATTGAACGGAATCGGGAGGCA
GAGCATTTTAGTAAGGATGAAATTCGCAAAGCAATTGGTGAGACAGAGGAGCGACTGCATGTCACCTATGCAGAGACACA
AGCGAATGCCATTGAGCAGGCTCTAAATTCAGCGGTCATGATTTTAACAGGTGGACCTGGTACTGGGAAAACAACGGTTG
TACGTGGGATCGTTGAAGTCTATGCACAGCTTCATGGGTTATCATTAAATCCAAAAGAATATGCACAAAAAGAACAGCCT
TTTCCCATTATTCTTTGTGCACCAACAGGGCGTGCTGCTAAACGCTTGGCTGAATCAACAGAGCTTCCTGCAATGACCAT
CCATCGTTTACTGGGCTTTACAGGACAAGAAAAAGAGGAAGAAACAGAGCGAGAAGTGACAGGGAAGCTCATTATTGTGG
ATGAGATGTCAATGGTTGATACATGGCTTGCCCATCAACTATTAAAGTCTTTACATGAGGATGTACAGGTAGTCTTTGTT
GGCGACCAAGATCAGCTTCCTCCAGTAGGTCCAGGACAGGTACTAAAGGATTTATTGGCATCAAAACAGTTGCCAACTGT
TGAATTAACGGATGTTTATAGACAAGCGGAAGGTTCAACGATTATCGAACTAGCCCATCAAATAAAAAAAGGAACGATTC
CTAATAATTTAACGATGAAAACAACTGATCGTTCATTTATCAAAGCATCAGCCGATCAAGTGGCAAATGTAGTTACACAG
GTGGTCAAGAGTGCTGTTGCAAAAGGACAAGAGATTCGCAATATCCAAGTGCTTGCGCCTATGTATAAAGGGCCGGCTGG
TATTGACAATTTAAATAAAATGATTCAAGAGCTGATTAACCCTAATGATACAGGCACACGCAAAGAGCTTGTTTTTGGTG
ATACCACCTATCGCATCAAAGACAAAGTGCTACAACTTGTCAACCAGCCTGAAAGCAATGTTTTTAATGGGGACATGGGA
GAAGTTGTTAGTATTATTAAGGCGAAGGAAACAATCGAAAAGCAGGATTTACTAGTTGTATCCTTCGATGGCATTGAGGT
AACGTATCAACGTGGTGATCTCAATCAGCTAACACTTGCCTACTGCTGCTCTATTCATAAATCGCAGGGCTCTGAGTTTC
AGACCGTGATTATGCCTGTTGTAAGAGGCTACTCGAAAATGCTACGACGCAATCTTTTATATACAGGCATTACACGAGCA
AAAAATTTCTTGATTTTATGTGGCGAGGCAGATGTGTTGGCAGATGGCCTACAGCGTACAGATGATCTTCAACGTTTTAC
CTCCTTACGTGCACGACTAAATCCAATGGAGGTGGCTGAAGAGCTAGTAGAGGTAGAGGCAGTTTCTGTAGCAGATGGAG
ATCGTCAGGAGTCATTATCCACTGACTATAAGCTTACCGTAGAAACCGCACCTACTATTCATCCACTGATTGGTATGGAT
CATGTATCACCTTATGATTTTTTAGAAAACTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_30)

(343-549)

Helix-hairpin-helix containing domain (HHH_RecD2)

(159-247)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(680-727)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(591-660)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

53.165

97.531

0.519

Multiple sequence alignment