Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   MHB44_RS13640 Genome accession   NZ_CP150292
Coordinates   2848281..2849972 (-) Length   563 a.a.
NCBI ID   WP_341299599.1    Uniprot ID   -
Organism   Lysinibacillus sp. FSL H8-0500     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2843281..2854972
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MHB44_RS13615 (MHB44_13615) - 2843451..2843642 (-) 192 WP_341299594.1 hypothetical protein -
  MHB44_RS13620 (MHB44_13620) - 2843924..2844811 (+) 888 WP_341299595.1 glycine betaine ABC transporter substrate-binding protein -
  MHB44_RS13625 (MHB44_13625) - 2845208..2845519 (-) 312 WP_341299596.1 hypothetical protein -
  MHB44_RS13630 (MHB44_13630) spo0A 2846022..2846813 (-) 792 WP_341299597.1 sporulation transcription factor Spo0A -
  MHB44_RS13635 (MHB44_13635) - 2847211..2848158 (-) 948 WP_341299598.1 SpoIVB peptidase S55 domain-containing protein -
  MHB44_RS13640 (MHB44_13640) recN 2848281..2849972 (-) 1692 WP_341299599.1 DNA repair protein RecN Machinery gene
  MHB44_RS13645 (MHB44_13645) argR 2850007..2850456 (-) 450 WP_053994451.1 transcriptional regulator ArgR -
  MHB44_RS13650 (MHB44_13650) - 2850557..2851375 (-) 819 WP_341299600.1 TlyA family RNA methyltransferase -
  MHB44_RS13655 (MHB44_13655) dxs 2851375..2853276 (-) 1902 WP_341299601.1 1-deoxy-D-xylulose-5-phosphate synthase -
  MHB44_RS13660 (MHB44_13660) - 2853441..2854322 (-) 882 WP_341299602.1 polyprenyl synthetase family protein -
  MHB44_RS13665 (MHB44_13665) - 2854326..2854559 (-) 234 WP_341299603.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 563 a.a.        Molecular weight: 63276.02 Da        Isoelectric Point: 4.7267

>NTDB_id=969736 MHB44_RS13640 WP_341299599.1 2848281..2849972(-) (recN) [Lysinibacillus sp. FSL H8-0500]
MLRELSIRNFAIIEDLTVSFSEGLTVLTGETGAGKSIIIDAVHLLAGGRGNSEFIRHGARKAELGGLFQISSTDHPVLRK
LEEAGIEIEEDTIILRRDLNDSGKSICRVNGKLVPLSVLREIGASLIDIHGQHENQELMDEKQHIHLLDHFAEEQLASVQ
IVYSAQYEEYRLLKKELASISIDEQLMAQRIDLYQFQIKELEEANLKLGEEDELLDERRRLMNFNKIFERSSAAYEAIQG
ESKGLDWIGNAMGALEDAATVDEQFKEASEAVTTAFYALQDAAYQVKNALDELEFDPARLNDVEQRLALLQNLKRKYGST
VAEILAYYEKIKTELNKLLNRDEILQVKERRVVEMEAVLNELATQLSTVRKAAAQQLSEAIMAELRELHMEKAKFIVNFE
ELSYFDANGRDLIVFYISTNVGEPPKSLPKIASGGELSRMMLALKTIFSSSNGITSIIFDEVDTGVSGRVAQAIAEKIAA
ISINSQVLCISHLPQVAAMADHHYFIKKEVEHDRTFTSLAEIDQHARIEEVSRMMSGAEITDLTLQHATELLTMAEERKK
QLR

Nucleotide


Download         Length: 1692 bp        

>NTDB_id=969736 MHB44_RS13640 WP_341299599.1 2848281..2849972(-) (recN) [Lysinibacillus sp. FSL H8-0500]
GTGTTAAGAGAGCTTAGTATTCGAAACTTTGCCATCATTGAGGATTTGACCGTTAGTTTTTCAGAAGGTTTAACTGTATT
AACAGGTGAAACGGGTGCGGGGAAATCCATTATTATAGATGCTGTCCATTTACTTGCTGGTGGACGTGGCAATTCTGAAT
TTATTCGTCATGGCGCAAGAAAAGCAGAATTAGGTGGCTTATTTCAAATTTCAAGTACAGATCATCCTGTTCTTAGAAAA
CTAGAGGAGGCTGGTATTGAAATAGAGGAGGACACCATTATTTTACGTCGTGATCTCAATGATTCAGGTAAAAGTATTTG
CCGTGTCAATGGTAAGCTTGTACCATTATCGGTACTAAGGGAGATTGGAGCCAGCTTAATTGATATTCATGGTCAGCATG
AAAATCAAGAGCTAATGGATGAGAAGCAACATATTCACTTACTTGATCATTTTGCAGAGGAGCAACTTGCGTCCGTTCAA
ATAGTGTATAGTGCACAGTATGAGGAATACCGTCTGCTTAAAAAGGAATTAGCTTCCATTTCAATCGATGAGCAATTAAT
GGCACAGCGGATTGATTTGTATCAATTTCAAATAAAGGAGCTAGAGGAAGCCAATTTAAAGCTTGGCGAGGAAGACGAGC
TTCTGGATGAGCGTCGCCGTCTCATGAATTTTAATAAAATTTTTGAACGCTCTAGTGCAGCCTATGAAGCCATCCAAGGG
GAGTCAAAGGGTCTTGATTGGATTGGCAATGCCATGGGTGCATTAGAAGACGCAGCCACTGTTGATGAGCAATTTAAAGA
GGCCTCTGAAGCCGTGACAACTGCCTTTTATGCTTTACAGGATGCCGCTTATCAGGTTAAAAATGCTTTAGATGAATTAG
AGTTTGATCCTGCTCGTTTAAATGATGTAGAGCAACGTCTAGCCTTACTGCAAAATTTAAAGCGCAAGTATGGTTCAACG
GTGGCAGAGATTTTAGCCTATTATGAAAAAATTAAAACAGAGTTAAATAAGCTGCTGAATCGTGATGAAATTTTGCAGGT
AAAAGAGCGTAGAGTAGTGGAAATGGAAGCGGTATTAAATGAGCTAGCCACACAGCTTTCAACAGTACGGAAAGCAGCTG
CCCAACAGTTAAGTGAGGCAATTATGGCAGAGCTACGTGAATTACATATGGAAAAGGCAAAATTTATTGTTAATTTCGAG
GAATTATCCTATTTCGATGCCAATGGTAGGGATCTAATTGTTTTCTATATCTCTACAAATGTGGGAGAACCACCAAAATC
CTTACCGAAAATTGCATCGGGAGGAGAATTATCACGAATGATGCTGGCACTAAAAACAATTTTTTCTTCTTCTAATGGTA
TTACCTCCATTATTTTTGATGAAGTGGACACAGGTGTTAGCGGTCGAGTGGCGCAAGCAATTGCTGAAAAAATTGCGGCA
ATTTCCATTAATTCGCAAGTTTTATGTATTTCCCATTTACCACAAGTCGCTGCAATGGCGGATCATCATTATTTTATTAA
AAAAGAAGTCGAACATGATCGAACATTTACATCTTTAGCGGAAATTGATCAACATGCACGAATTGAAGAGGTCAGTCGTA
TGATGTCTGGGGCAGAAATTACCGATCTAACCCTACAACATGCTACAGAGCTTTTAACAATGGCGGAAGAACGCAAAAAA
CAATTACGTTAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-509)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

52.686

100

0.54

Multiple sequence alignment