Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   NSQ62_RS20590 Genome accession   NZ_CP150291
Coordinates   4080292..4081665 (-) Length   457 a.a.
NCBI ID   WP_341321873.1    Uniprot ID   -
Organism   Solibacillus sp. FSL H8-0523     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4075292..4086665
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSQ62_RS20570 (NSQ62_20570) ispF 4076859..4077335 (-) 477 WP_341323990.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  NSQ62_RS20575 (NSQ62_20575) ispD 4077458..4078147 (-) 690 WP_341321870.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  NSQ62_RS20580 (NSQ62_20580) - 4078161..4079237 (-) 1077 WP_341321871.1 PIN/TRAM domain-containing protein -
  NSQ62_RS20585 (NSQ62_20585) - 4079542..4080192 (+) 651 WP_341321872.1 acetate uptake transporter -
  NSQ62_RS20590 (NSQ62_20590) radA 4080292..4081665 (-) 1374 WP_341321873.1 DNA repair protein RadA Machinery gene
  NSQ62_RS20595 (NSQ62_20595) - 4081899..4084343 (-) 2445 WP_341321874.1 ATP-dependent Clp protease ATP-binding subunit -
  NSQ62_RS20600 (NSQ62_20600) - 4084333..4085433 (-) 1101 WP_341321875.1 protein arginine kinase -
  NSQ62_RS20605 (NSQ62_20605) - 4085430..4085963 (-) 534 WP_341321876.1 UvrB/UvrC motif-containing protein -
  NSQ62_RS20610 (NSQ62_20610) - 4085975..4086439 (-) 465 WP_341321877.1 CtsR family transcriptional regulator -

Sequence

Protein


Download         Length: 457 a.a.        Molecular weight: 50305.92 Da        Isoelectric Point: 7.4607

>NTDB_id=969713 NSQ62_RS20590 WP_341321873.1 4080292..4081665(-) (radA) [Solibacillus sp. FSL H8-0523]
MAKKKSKFMCSSCGYEAAKWMGRCPGCGEWNTMNEEVEVITKGPRGAFQHSTTTTKATPIIHVEAQEETRIVTQMNEFNR
VLGGGIVPGSLILIGGDPGIGKSTLLLQVSALLSNQGKRVLYISGEESVRQTKLRAERLGVKSAELYIYSETNLEFLHQT
IEEVQPKFVIVDSIQTVHHPEVTSAPGSVSQVRECTAELMRIAKTKNIAIFLVGHVTKEGQIAGPRILEHMVDTVLYFEG
ERHHNHRILRSQKNRFGSTNEIAIFEMLQGGLKEVLNPSELFLQERSQGAPGSTIVASMEGTRPILVEIQSLVTPTSFNY
PKRMATGVDQNRVQLLMAVLEKRMGMMLQAQDAYIKVAGGVKLDEPAIDLAVLTSIVSSFKDQAVNPTDCFIGEVGLTGE
VRRVSRIEQRVQEAAKLGFRRAIIPTSNIGGWEFPEGIQVVGVETISDALRASFKDL

Nucleotide


Download         Length: 1374 bp        

>NTDB_id=969713 NSQ62_RS20590 WP_341321873.1 4080292..4081665(-) (radA) [Solibacillus sp. FSL H8-0523]
ATGGCAAAAAAGAAATCGAAATTTATGTGTAGTAGCTGTGGTTATGAGGCAGCCAAATGGATGGGGCGCTGTCCAGGCTG
TGGGGAATGGAACACAATGAACGAAGAAGTAGAAGTCATTACAAAAGGGCCTCGTGGGGCGTTCCAACATTCAACCACTA
CGACAAAAGCAACGCCAATTATTCATGTGGAAGCACAAGAAGAAACACGCATCGTCACGCAAATGAACGAGTTTAACCGC
GTACTTGGTGGCGGGATTGTTCCAGGCTCACTTATATTAATTGGGGGGGACCCGGGGATTGGGAAATCGACGTTACTTCT
ACAAGTGTCCGCGTTGTTATCAAACCAAGGTAAGCGCGTCCTGTATATTTCAGGTGAGGAATCTGTGCGTCAAACAAAGC
TACGCGCGGAACGTTTAGGAGTTAAATCAGCAGAGCTCTATATTTATTCTGAAACGAACTTAGAGTTTTTACATCAAACG
ATTGAGGAAGTCCAACCTAAATTCGTCATTGTCGATTCGATTCAAACAGTGCATCATCCAGAAGTAACGAGTGCACCGGG
AAGTGTTTCGCAAGTACGTGAATGTACAGCAGAACTGATGCGCATTGCGAAAACGAAAAATATTGCGATTTTCTTAGTTG
GTCATGTAACAAAAGAAGGCCAAATTGCCGGACCACGTATTTTAGAGCATATGGTGGATACGGTGCTGTACTTTGAAGGG
GAACGTCATCATAACCATCGCATTTTACGTAGCCAAAAAAACCGATTTGGTTCGACCAATGAAATCGCGATCTTTGAAAT
GCTGCAAGGTGGCTTAAAGGAAGTACTCAATCCGTCTGAGCTATTTTTACAGGAGCGTTCACAAGGGGCGCCTGGTTCAA
CGATTGTTGCTTCGATGGAAGGAACGCGCCCGATTTTAGTTGAAATCCAGTCGCTGGTTACACCGACGAGCTTTAACTAT
CCAAAGCGGATGGCAACAGGGGTTGACCAAAACCGCGTGCAGTTGTTAATGGCGGTGCTTGAAAAACGTATGGGCATGAT
GCTCCAAGCACAAGATGCGTATATAAAGGTGGCTGGTGGGGTAAAACTAGACGAACCTGCCATTGACCTAGCGGTATTAA
CAAGTATTGTTTCAAGCTTTAAAGACCAAGCAGTAAACCCAACCGATTGCTTTATTGGTGAGGTAGGTTTAACTGGTGAA
GTACGACGTGTCTCACGTATTGAGCAGCGAGTACAAGAAGCCGCAAAACTAGGATTCCGTCGTGCAATTATTCCGACGTC
AAACATTGGTGGTTGGGAATTTCCTGAAGGGATTCAAGTAGTAGGCGTCGAAACAATTAGTGATGCGTTACGTGCATCTT
TTAAAGATTTATAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(70-220)

Subunit ChlI of Mg-chelatase (ChlI)

(344-428)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

70.524

100

0.707
  radA Streptococcus pneumoniae Rx1

62.637

99.562

0.624
  radA Streptococcus pneumoniae D39

62.637

99.562

0.624
  radA Streptococcus pneumoniae R6

62.637

99.562

0.624
  radA Streptococcus pneumoniae TIGR4

62.637

99.562

0.624
  radA Streptococcus mitis NCTC 12261

62.637

99.562

0.624
  radA Streptococcus mitis SK321

62.637

99.562

0.624

Multiple sequence alignment