Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   ACJWMC_RS04505 Genome accession   NZ_CP177181
Coordinates   888394..890595 (+) Length   733 a.a.
NCBI ID   WP_037598113.1    Uniprot ID   -
Organism   Streptococcus salivarius strain MRD1919     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 883394..895595
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACJWMC_RS04475 hflX 883808..885046 (+) 1239 WP_014634308.1 GTPase HflX -
  ACJWMC_RS04480 - 885039..885680 (+) 642 WP_002890748.1 hypothetical protein -
  ACJWMC_RS04485 rnz 885712..886641 (+) 930 WP_002890749.1 ribonuclease Z -
  ACJWMC_RS04490 - 886641..887408 (+) 768 WP_002890750.1 SDR family NAD(P)-dependent oxidoreductase -
  ACJWMC_RS04495 - 887420..887575 (+) 156 WP_080583692.1 SAM-dependent methyltransferase -
  ACJWMC_RS04500 - 887679..888083 (+) 405 WP_002890751.1 GNAT family N-acetyltransferase -
  ACJWMC_RS04505 recJ 888394..890595 (+) 2202 WP_037598113.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  ACJWMC_RS04510 - 890715..891233 (+) 519 WP_002890753.1 adenine phosphoribosyltransferase -
  ACJWMC_RS04515 metA 891406..892350 (+) 945 WP_002890754.1 homoserine O-acetyltransferase MetA -
  ACJWMC_RS04520 - 892422..893120 (+) 699 WP_002890756.1 DnaD domain-containing protein -
  ACJWMC_RS04525 nth 893120..893764 (+) 645 WP_021144303.1 endonuclease III -
  ACJWMC_RS04530 - 893892..894653 (+) 762 WP_002890759.1 hypothetical protein -

Sequence

Protein


Download         Length: 733 a.a.        Molecular weight: 82267.49 Da        Isoelectric Point: 4.3752

>NTDB_id=969705 ACJWMC_RS04505 WP_037598113.1 888394..890595(+) (recJ) [Streptococcus salivarius strain MRD1919]
MITSTYDWKINTKEPDAGFFKLAKEHGLAETAAKIAYERGITTEDALEDFLKADLSHLHDPYLLHDMDKAVARIRQAIEN
YEQILVYGDYDADGMTSASIVKEALEMMGAEARVYLPNRFTDGYGPNKSVYKYFIEQEGISLIVTVDNGVAGNEAIAYAQ
EQGVDVIVTDHHSMPAQLPDAFAIVHPEHPDADYPFKYLAGCGVAFKLATALLETIPTEMLDLVAIGTIADIVSLRDENR
IMVKVGLEILKTTERIGLQELLRISDVDPTTISEETVGFKLAPQLNALGRLDDPNPAIELLTGFDDEEAQAIALEINAKN
EERKEVVQKIFDEAMTMVDLDKPVQVLAKEGWHPGVLGIVAGRIMEQISQTVVVLNIEDGLAKGSARSLESINIFHALDE
HRDIFTAFGGHAGAAGMTLPEENLGRLSDILCHYVYDNDIDTSAKNTLNLDEELQLSELSLDTIKSLEKLAPFGMDNKKP
VFWLHDITVTQARTMGQNGAHLKFKVKQGKDSFDVVAFNKGDLFQEFQQAQGLELAVTLSVNLWNGQTTLQLMLEDARVD
GVQLFDFRSKNMALPEGLPTVEEASDTEPAVVLNTLPDSATEVKEWFEGKDFQAIYFKNSIKEAYYLTGYGTREQFARLY
KTIYQFPEFDVRYKLDELSHYLKIDKILLIKMIQIFDELDFVTIDNGVMTVNKEAEKREIEDSKIFQDLKHLVKFQELMA
LGTPQEIYDWLYK

Nucleotide


Download         Length: 2202 bp        

>NTDB_id=969705 ACJWMC_RS04505 WP_037598113.1 888394..890595(+) (recJ) [Streptococcus salivarius strain MRD1919]
ATGATTACATCAACGTATGATTGGAAAATAAACACAAAAGAGCCAGATGCTGGCTTTTTTAAACTTGCCAAAGAACATGG
TCTGGCAGAGACAGCTGCCAAGATTGCTTATGAACGTGGCATTACGACAGAAGATGCTCTTGAAGACTTTCTAAAGGCTG
ATTTATCACACCTTCATGATCCTTATCTTCTTCATGATATGGATAAGGCAGTGGCTAGAATTCGTCAGGCCATTGAAAAT
TATGAACAAATCTTAGTCTATGGAGACTATGATGCAGATGGTATGACATCAGCATCGATTGTCAAGGAAGCTCTTGAAAT
GATGGGCGCTGAAGCTCGAGTCTATTTGCCTAACCGTTTTACAGATGGTTATGGGCCAAACAAAAGTGTCTACAAGTACT
TCATTGAACAGGAAGGTATTTCACTCATTGTTACAGTGGATAATGGGGTAGCGGGGAATGAGGCTATCGCTTATGCGCAA
GAGCAAGGTGTGGACGTTATCGTTACAGACCATCACAGTATGCCGGCACAGCTTCCAGATGCCTTTGCCATTGTCCATCC
AGAGCACCCAGATGCCGATTATCCTTTTAAGTATTTGGCAGGCTGTGGTGTAGCTTTCAAATTGGCAACTGCCCTCCTTG
AAACTATTCCTACAGAGATGTTGGACTTGGTAGCCATTGGTACCATTGCCGATATAGTTAGCCTAAGGGATGAAAATCGT
ATTATGGTCAAGGTCGGCCTGGAAATTCTAAAGACTACTGAGCGTATTGGACTGCAAGAGTTACTCCGTATTTCAGATGT
AGACCCAACAACGATTTCTGAAGAAACGGTAGGATTTAAGCTGGCCCCTCAACTCAATGCCTTGGGGCGCTTAGATGATC
CAAATCCAGCCATTGAACTGCTGACCGGATTTGACGATGAAGAAGCCCAAGCCATTGCTCTGGAAATCAATGCTAAAAAT
GAAGAACGTAAGGAAGTTGTTCAAAAAATCTTTGATGAAGCCATGACTATGGTAGACTTGGACAAACCAGTTCAGGTTTT
GGCAAAGGAAGGTTGGCATCCTGGCGTTCTAGGTATTGTAGCGGGGCGCATCATGGAGCAAATCAGCCAGACAGTAGTGG
TTTTGAATATTGAAGATGGCTTGGCTAAGGGTTCAGCCCGTAGTTTGGAATCTATCAATATCTTCCATGCGCTTGATGAA
CACCGAGACATCTTTACTGCATTTGGAGGACATGCTGGAGCGGCGGGGATGACACTTCCTGAAGAAAATCTTGGACGACT
GTCAGATATTTTGTGTCATTATGTCTACGATAATGACATTGATACGAGTGCCAAAAATACGTTAAATTTAGACGAGGAGC
TCCAACTCAGTGAGCTTAGCTTGGATACCATTAAGAGCCTAGAAAAACTAGCACCTTTTGGTATGGATAATAAAAAGCCA
GTCTTTTGGCTACATGATATTACCGTTACTCAAGCTAGGACTATGGGACAAAACGGAGCCCATCTTAAGTTTAAGGTTAA
GCAAGGCAAGGATAGCTTTGATGTTGTCGCTTTTAACAAAGGTGATCTGTTTCAAGAATTCCAACAAGCTCAGGGTTTGG
AATTGGCAGTGACCTTGTCTGTTAATCTTTGGAATGGTCAGACAACACTCCAGCTCATGCTAGAAGATGCGCGTGTGGAT
GGTGTTCAATTATTTGATTTTCGCTCAAAAAACATGGCACTGCCTGAAGGCCTACCAACGGTAGAAGAAGCATCAGACAC
TGAACCTGCGGTTGTCCTCAACACCTTACCTGATTCAGCGACAGAAGTAAAAGAGTGGTTTGAAGGTAAAGATTTCCAGG
CTATTTATTTTAAGAATAGTATTAAGGAAGCTTATTATTTGACAGGTTATGGAACTAGAGAGCAATTTGCAAGACTCTAT
AAAACCATTTACCAATTCCCAGAATTCGATGTCCGTTATAAACTGGATGAACTCAGTCATTACCTTAAAATCGACAAGAT
TCTCCTGATTAAGATGATTCAAATCTTTGATGAATTGGATTTTGTGACTATTGATAATGGTGTTATGACAGTCAATAAAG
AAGCTGAAAAACGTGAGATTGAGGACAGCAAGATTTTCCAAGATCTTAAACATCTCGTCAAGTTCCAAGAACTTATGGCT
TTAGGGACACCACAGGAAATTTATGACTGGCTTTATAAGTAG

Domains

Predicted by InterProScan.

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(584-731)

DHHA1 domain (DHHA1)

(317-431)

DHH family (DHH)

(83-228)

RecJ OB domain (RecJ_OB)

(451-556)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Streptococcus pneumoniae strain D39V

67.255

100

0.675
  recJ Bacillus subtilis subsp. subtilis str. 168

37.676

100

0.402