Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   MHB80_RS00680 Genome accession   NZ_CP150290
Coordinates   144801..145172 (+) Length   123 a.a.
NCBI ID   WP_341282816.1    Uniprot ID   -
Organism   Paenibacillus sp. FSL H8-0537     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 139801..150172
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MHB80_RS00650 (MHB80_00650) - 140353..140964 (-) 612 WP_341280376.1 hypothetical protein -
  MHB80_RS00660 (MHB80_00660) - 141905..142252 (+) 348 WP_341280377.1 hypothetical protein -
  MHB80_RS00665 (MHB80_00665) - 142267..142425 (+) 159 WP_341280378.1 small acid-soluble spore protein P -
  MHB80_RS00670 (MHB80_00670) - 142563..143606 (+) 1044 WP_341280379.1 hypothetical protein -
  MHB80_RS00675 (MHB80_00675) - 143758..144504 (+) 747 WP_341280380.1 DsbA family oxidoreductase -
  MHB80_RS00680 (MHB80_00680) nucA/comI 144801..145172 (+) 372 WP_341282816.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  MHB80_RS00685 (MHB80_00685) - 145578..147938 (+) 2361 WP_341280381.1 collagen-like protein -
  MHB80_RS00690 (MHB80_00690) - 148016..149119 (+) 1104 WP_341280382.1 glycosyltransferase family 2 protein -

Sequence

Protein


Download         Length: 123 a.a.        Molecular weight: 13601.22 Da        Isoelectric Point: 6.7125

>NTDB_id=969654 MHB80_RS00680 WP_341282816.1 144801..145172(+) (nucA/comI) [Paenibacillus sp. FSL H8-0537]
MGWLDELAKDWNTAEGTDYTLYFPTDRYPETGKHIKDAIAAGKSPICTIDREGADQNRKKSLQGVKVKKGFDRDEWPMAM
CAEGGSGAHIAYIDPSDNRGAGSWVSNQLEKHPNGSRIAFVIK

Nucleotide


Download         Length: 372 bp        

>NTDB_id=969654 MHB80_RS00680 WP_341282816.1 144801..145172(+) (nucA/comI) [Paenibacillus sp. FSL H8-0537]
ATGGGCTGGCTCGATGAGCTGGCGAAAGATTGGAACACGGCAGAAGGAACAGATTACACGTTATATTTTCCGACGGATCG
ATACCCGGAGACAGGCAAGCATATCAAAGATGCGATTGCAGCGGGGAAATCCCCCATTTGTACGATTGATCGGGAAGGCG
CGGATCAGAATCGGAAGAAATCTTTGCAGGGAGTCAAAGTGAAAAAAGGCTTTGATCGCGATGAATGGCCAATGGCTATG
TGCGCAGAAGGCGGGAGCGGAGCGCATATTGCTTATATTGACCCATCGGATAATCGCGGGGCAGGGTCATGGGTTAGCAA
CCAGCTGGAGAAACATCCGAATGGATCGAGAATTGCTTTTGTCATCAAATAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(27-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

56.198

98.374

0.553

Multiple sequence alignment