Detailed information    

insolico Bioinformatically predicted

Overview


Name   rexA   Type   Machinery gene
Locus tag   ACJVG6_RS08670 Genome accession   NZ_CP177180
Coordinates   1835496..1839149 (-) Length   1217 a.a.
NCBI ID   WP_004183410.1    Uniprot ID   -
Organism   Streptococcus salivarius strain MRD-KRBY     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context


Location: 1830496..1844149
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACJVG6_RS08650 proB 1830891..1831694 (-) 804 WP_004183407.1 glutamate 5-kinase -
  ACJVG6_RS08655 - 1831814..1833403 (-) 1590 WP_004183409.1 DUF4231 domain-containing protein -
  ACJVG6_RS08660 - 1833406..1834137 (-) 732 WP_002891761.1 ABC transporter ATP-binding protein -
  ACJVG6_RS08665 - 1834411..1835142 (+) 732 WP_002891763.1 DUF554 domain-containing protein -
  ACJVG6_RS08670 rexA 1835496..1839149 (-) 3654 WP_004183410.1 helicase-exonuclease AddAB subunit AddA Machinery gene
  ACJVG6_RS08675 rexB 1839139..1842459 (-) 3321 WP_004183412.1 ATP-dependent nuclease subunit B Machinery gene
  ACJVG6_RS08680 - 1842710..1844083 (-) 1374 WP_004183414.1 GHKL domain-containing protein -

Sequence


Protein


Download         Length: 1217 a.a.        Molecular weight: 138139.29 Da        Isoelectric Point: 4.7146

>NTDB_id=969628 ACJVG6_RS08670 WP_004183410.1 1835496..1839149(-) (rexA) [Streptococcus salivarius strain MRD-KRBY]
MLTKAFLSPTEIKECIVQEAASNKERKLTPEQIEAIYSNGTNILVSASAGSGKTFVMVERILDMIGRGVGIDQLFISTFT
VKAAGELKERLEKRLTEQLGQVETDEERAFLSDQIAKIGTADIGTMDAFTQKLVNQYGYLLGVSPIFRIMTDPAEQTLMK
NEVYADLFNDYMQGKDAQLFQKLVRNFAGNGKTSKAFRDLVYDVYSFSQATAGPEKWLRQNLLKGQAEANPNKAKAELLE
GLKDGLLADFLAFLRDHLGLAQREFAKAKYLNNVSDAISLLEGALANDQTDMEDLLKQLLTLSGGTGLTNMTRPKDEELK
AYKEAYNKTKNEFVAQLREVDTQLTVLEVLTKHNDDILPLLELLQAFVLDFSDQYLQAKIQENAFEFSDIAHFAIRILED
NPEVAASYRDRYHEVMVDEYQDNSHTQERMLELLSNGHNRFMVGDIKQSIYRFRQADPQIFNGKFQLFLENPDVGKLILL
KENFRSQSEVLDATNGVFSHLMDQEIGDILYDKTHMLVAGSQKQKDPHPENETEVLIYNSDEASVTPDEEGADQPISSGE
ISLVIKEIIKLHEQGVRFEDITLLAPTRNTYLDLMASFEEHGIPLVPDEYKSSYLESLEVMIMLDTLRAINNPLNDYALV
ALLRSPMFNFNEDDLARIAVQADKEQFYDKLLAAHTKSGLHPEVVTQELEAKLNLFTKTLADWRDYSKWHSLYDLIWKIY
DDRFYYDYVGSLPRAEQRQANLYALALRANAYEKTGFKGLSRFIGMIDKIISSGNDLEEVTDLVPKNAVSLMTIHKSKGL
EFKYVFVLQMNRKFIGHSKDGLSGKYIINREKGLGIKYLADLKDQINTNLPKLNVVLETLIFQENRREERRASISEEMRL
LYVAMTRAEKKLYLVGKGSKEKLTQQFGTDVENNRLPIALRDQIATYQDWVMALDTAFMRKDLKFTVRFVEAEELTPEAI
GQVEVQAAVDADDLSNNRQTEDIKRALTVLESVEKLNQLYAPAIDLPSVRTPSQLKAFYEPVMDTEGVDIMDKKEEVQPL
ETSTSFELPDFGQKTKVTGAAVGSATHELMQRLSLSDKVTLQDLTQALSLVSADDQVKARVELEKLLGFFDTELGKLILA
NRDKLRREAPFAMLAEDPASKEDFVVRGIIDGYLLLEDRIVLFDYKTDRFTQHGELKERYKGQMSLYAKALSQAYQIDKI
DKYLILLGGQDLEVVEV

Nucleotide


Download         Length: 3654 bp        

>NTDB_id=969628 ACJVG6_RS08670 WP_004183410.1 1835496..1839149(-) (rexA) [Streptococcus salivarius strain MRD-KRBY]
ATGTTGACTAAAGCTTTTTTAAGTCCAACAGAGATTAAGGAATGCATTGTCCAAGAAGCAGCTTCTAACAAGGAACGCAA
GTTAACACCTGAGCAGATTGAGGCCATTTACAGTAATGGTACTAATATTCTTGTATCAGCTTCGGCTGGATCAGGAAAAA
CCTTTGTTATGGTTGAGCGTATCCTTGATATGATTGGACGTGGCGTTGGCATTGATCAACTCTTTATCTCAACCTTTACG
GTAAAGGCCGCGGGTGAGTTAAAAGAGCGTCTGGAAAAGCGTCTGACAGAGCAACTTGGACAAGTTGAGACGGATGAAGA
GCGTGCCTTTCTTTCAGATCAGATTGCCAAGATTGGGACAGCTGATATTGGAACTATGGATGCCTTCACCCAGAAATTGG
TCAATCAGTATGGCTATCTCTTGGGTGTGTCACCTATTTTCCGCATTATGACAGATCCTGCCGAGCAGACACTTATGAAA
AATGAGGTTTATGCCGATCTTTTCAACGATTATATGCAAGGGAAGGATGCCCAACTTTTCCAAAAATTGGTCCGTAACTT
TGCTGGAAATGGCAAGACTAGTAAGGCCTTTCGTGATTTAGTTTACGATGTCTATAGCTTTTCTCAGGCTACTGCAGGTC
CTGAAAAATGGCTACGTCAAAATCTTTTAAAAGGGCAGGCAGAGGCCAATCCAAACAAGGCTAAAGCTGAGCTTTTAGAG
GGTCTCAAAGATGGCTTGTTGGCTGATTTCTTAGCCTTCTTAAGAGACCATCTAGGCCTAGCTCAGCGTGAATTTGCCAA
GGCTAAGTATCTTAATAATGTGTCGGATGCCATTAGCCTTCTTGAAGGAGCCTTGGCCAATGACCAAACGGATATGGAGG
ACTTGCTCAAACAACTCTTGACTTTGTCAGGAGGTACTGGTTTGACCAATATGACCCGTCCTAAAGACGAGGAACTCAAG
GCCTACAAGGAAGCTTACAACAAGACCAAAAATGAGTTTGTGGCTCAGTTGCGAGAGGTTGATACCCAACTAACGGTCCT
CGAGGTTTTGACCAAGCATAATGATGACATCCTACCTCTGTTAGAGCTGCTTCAGGCCTTTGTACTTGATTTTTCGGACC
AGTATTTACAGGCAAAGATTCAGGAAAATGCTTTTGAATTCTCAGATATTGCCCATTTTGCTATCCGTATTTTGGAGGAT
AATCCAGAGGTGGCAGCTAGCTACCGTGACCGTTACCATGAAGTGATGGTAGATGAGTATCAGGACAATAGCCATACCCA
AGAACGCATGTTGGAACTCCTATCTAACGGCCACAATCGATTCATGGTGGGAGATATCAAGCAATCCATCTATCGTTTCC
GTCAGGCAGACCCTCAGATTTTTAACGGCAAGTTCCAGCTCTTCCTTGAAAATCCAGATGTAGGTAAGCTGATTCTTCTT
AAAGAGAACTTCCGTAGTCAATCTGAGGTTCTTGATGCGACCAATGGTGTTTTCAGTCACCTCATGGATCAGGAAATCGG
AGACATCCTCTATGACAAGACTCACATGCTGGTAGCGGGTAGCCAGAAGCAAAAAGACCCCCATCCTGAAAATGAGACAG
AGGTTCTGATTTACAATAGTGATGAAGCTAGTGTGACTCCTGACGAAGAAGGTGCTGATCAACCTATTAGTAGCGGCGAG
ATTTCCTTGGTTATCAAAGAAATCATCAAACTTCACGAGCAGGGTGTACGTTTTGAGGACATTACCCTCCTAGCACCAAC
CCGTAACACCTATCTGGACTTGATGGCAAGCTTTGAGGAGCACGGAATTCCATTGGTTCCTGACGAGTACAAGTCAAGCT
ACCTAGAGTCACTAGAAGTTATGATTATGTTGGATACCCTTCGTGCCATCAATAATCCTCTCAACGACTACGCCTTGGTT
GCCCTCCTTCGTTCACCTATGTTTAACTTCAACGAGGACGACCTGGCTCGGATCGCTGTTCAGGCTGACAAAGAGCAATT
CTATGACAAGCTTCTTGCAGCTCATACTAAATCAGGACTTCATCCAGAAGTTGTGACGCAAGAACTTGAGGCAAAGTTAA
ATCTTTTCACTAAGACTCTGGCAGATTGGCGTGATTACAGTAAGTGGCACTCGCTCTATGACCTCATCTGGAAGATTTAC
GACGATCGTTTCTATTATGATTATGTTGGCAGTCTTCCACGAGCTGAGCAACGTCAGGCCAATCTCTACGCCCTTGCCTT
GCGTGCCAATGCCTATGAAAAGACTGGCTTTAAGGGACTTTCTCGTTTTATTGGTATGATTGATAAAATCATTTCTAGCG
GTAACGACCTAGAGGAAGTGACAGACTTGGTTCCCAAAAATGCCGTTAGCCTTATGACCATTCACAAGTCCAAGGGACTA
GAGTTCAAGTATGTCTTTGTCTTGCAGATGAATCGCAAGTTCATTGGTCACAGCAAGGACGGACTGAGTGGTAAGTACAT
CATTAACCGTGAAAAAGGACTAGGCATTAAGTACCTAGCTGACCTCAAAGACCAGATAAACACCAATTTGCCTAAGTTAA
ATGTTGTTCTTGAGACCTTAATCTTCCAGGAAAATCGTAGGGAAGAACGCCGAGCAAGTATCTCAGAAGAGATGCGTCTG
CTCTATGTTGCAATGACCCGTGCTGAGAAAAAACTCTATCTAGTTGGTAAGGGCAGTAAGGAGAAATTGACCCAGCAATT
TGGCACGGATGTTGAAAATAATCGCCTACCAATAGCTCTACGTGACCAAATCGCTACTTATCAGGATTGGGTTATGGCTT
TGGATACTGCCTTTATGAGAAAGGATCTCAAGTTTACTGTTCGCTTTGTTGAGGCTGAGGAGTTGACTCCAGAGGCTATT
GGTCAGGTTGAAGTTCAAGCGGCAGTAGATGCTGATGATCTATCTAACAATCGCCAGACGGAAGACATTAAGCGTGCCCT
AACGGTCTTAGAAAGTGTTGAAAAACTCAACCAACTTTATGCACCAGCGATTGACCTGCCATCTGTGCGTACGCCCAGCC
AGCTCAAAGCCTTCTACGAACCTGTCATGGATACGGAAGGGGTGGATATTATGGACAAGAAAGAGGAGGTGCAACCTCTT
GAGACATCCACTAGCTTTGAGCTTCCAGATTTTGGGCAAAAAACGAAGGTCACTGGAGCTGCAGTTGGTTCAGCCACCCA
TGAACTCATGCAACGCTTGAGTCTTTCTGACAAGGTGACCCTTCAAGATCTGACTCAGGCGCTAAGTCTAGTATCGGCAG
ATGATCAAGTCAAGGCGCGTGTGGAGTTAGAAAAACTTTTAGGCTTCTTTGACACCGAACTTGGGAAGCTCATTCTAGCT
AACCGTGATAAGTTGCGTCGTGAAGCGCCATTTGCAATGTTGGCAGAAGATCCGGCTAGTAAAGAAGACTTTGTCGTCCG
TGGTATTATCGATGGCTACCTTCTTCTTGAAGACCGTATTGTCCTCTTTGACTATAAGACGGACCGCTTCACTCAACATG
GTGAGCTTAAGGAACGCTACAAAGGGCAAATGAGCCTCTATGCTAAAGCACTCAGCCAAGCCTATCAAATAGATAAGATT
GATAAATACCTTATTCTCCTAGGTGGACAAGACTTGGAAGTCGTAGAGGTATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rexA Streptococcus pneumoniae R6

51.02

100

0.514