Detailed information    

insolico Bioinformatically predicted

Overview

Name   recP/tkt   Type   Machinery gene
Locus tag   ACJVG6_RS07560 Genome accession   NZ_CP177180
Coordinates   1609512..1611497 (-) Length   661 a.a.
NCBI ID   WP_004183062.1    Uniprot ID   -
Organism   Streptococcus salivarius strain MRD-KRBY     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1604512..1616497
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACJVG6_RS07530 rsmI 1605710..1606576 (-) 867 WP_004183053.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  ACJVG6_RS07535 yabA 1606579..1606899 (-) 321 WP_002887582.1 DNA replication initiation control protein YabA -
  ACJVG6_RS07540 yaaT 1606886..1607692 (-) 807 WP_004183057.1 regulatory iron-sulfur-containing complex subunit RicT Regulator
  ACJVG6_RS07545 - 1607689..1608564 (-) 876 WP_004183058.1 DNA polymerase III subunit delta' -
  ACJVG6_RS07550 tmk 1608573..1609202 (-) 630 WP_004183060.1 dTMP kinase -
  ACJVG6_RS07560 recP/tkt 1609512..1611497 (-) 1986 WP_004183062.1 transketolase Machinery gene
  ACJVG6_RS07565 tpiA 1611763..1612521 (-) 759 WP_002890214.1 triose-phosphate isomerase -
  ACJVG6_RS07570 tuf 1612775..1613971 (-) 1197 WP_002890213.1 elongation factor Tu -
  ACJVG6_RS07575 ftsW 1614208..1615488 (-) 1281 WP_004183063.1 cell division peptidoglycan polymerase FtsW -
  ACJVG6_RS07580 - 1615763..1616179 (-) 417 WP_002890211.1 F0F1 ATP synthase subunit epsilon -

Sequence

Protein


Download         Length: 661 a.a.        Molecular weight: 70922.60 Da        Isoelectric Point: 4.8035

>NTDB_id=969618 ACJVG6_RS07560 WP_004183062.1 1609512..1611497(-) (recP/tkt) [Streptococcus salivarius strain MRD-KRBY]
MTFDAIDQMAVSTIRSLSIEAIQAANSGHPGLPMGAAPMAYVLWNHVMNVNPKTSRNWTNRDRFVLSAGHGSALLYSLLH
LSGYDVTMDDLKNFRQWGSKTPGHPEVNHTDGIEATSGPLGQGIANAVGMAMAEAHLAAKFNKPGFDIVDHYTYALHGDG
CLMEGVSQEAASLAGHLKLGKLVLLYDSNDISLDGPTSMAFTEDVKAKFEAYGWQHILVKDGNDLEAIAKAIEEAKAETD
KPSIIEVKTIIGYGAEGQGTSAVHGAPIGQDGIDHAKGVYGYDAPAFTVPDEVARRFEVGIKFRGEAAENAWQTKFAEYE
TAYPELAAEYKAAFANEPVHVNLNAHELGSAVASRVSSQQAIQQISEQVPSFWGGSADLSASNNTMVKAESDFQADNYAG
RNIWFGVREFAMAAAMNGIALHGGTRVYGGTFFVFSNYLLPAVRMAALQNLPVTYVMTHDSVAVGEDGPTHEPIEQLASV
RSMPNLNVIRPADGNETNAAWKRALAETERPTMLVLTRQNLPVLDGTAENAETGVNKGAYIISEAKGDLDGIIIATGSEV
KLALDTQAALEAEGVHVRVVSMPSQNLFDEQDAAYKEEVLPTAVTKRLAIEAGTSFGWGKYVGLAGKTLTIDTWGASAPG
DRIFKEYGFTVENASQLYKSL

Nucleotide


Download         Length: 1986 bp        

>NTDB_id=969618 ACJVG6_RS07560 WP_004183062.1 1609512..1611497(-) (recP/tkt) [Streptococcus salivarius strain MRD-KRBY]
ATGACTTTTGATGCAATTGACCAAATGGCGGTCAGCACTATTCGTTCGCTTTCGATCGAGGCAATTCAAGCCGCGAATTC
TGGGCACCCAGGTCTTCCTATGGGTGCAGCGCCAATGGCTTATGTGCTTTGGAACCATGTGATGAATGTTAATCCAAAGA
CAAGCCGTAACTGGACAAACCGTGACCGTTTTGTTCTTTCTGCAGGTCATGGTTCTGCCTTACTTTATAGTCTCTTGCAC
CTTTCTGGCTACGACGTGACAATGGACGACTTGAAGAACTTCCGTCAATGGGGATCTAAGACTCCAGGTCACCCTGAAGT
TAACCATACAGATGGTATTGAAGCAACATCAGGTCCTCTTGGTCAAGGAATTGCTAATGCTGTAGGTATGGCAATGGCTG
AAGCACACTTGGCAGCTAAATTTAACAAACCTGGTTTTGATATTGTTGACCATTATACTTATGCCCTCCATGGCGATGGA
TGTTTGATGGAAGGTGTTTCTCAAGAAGCTGCTAGTCTTGCTGGTCACCTTAAACTTGGTAAGTTGGTACTTCTTTACGA
TTCAAATGATATCTCACTTGATGGGCCAACTTCAATGGCTTTCACTGAAGATGTTAAGGCTAAGTTTGAAGCTTATGGTT
GGCAACACATTCTTGTCAAAGATGGTAATGATTTGGAAGCTATCGCTAAAGCTATCGAAGAAGCTAAAGCTGAGACAGAT
AAACCATCTATTATCGAAGTTAAGACAATCATTGGTTACGGAGCTGAAGGACAAGGAACATCAGCTGTCCACGGTGCTCC
AATTGGTCAAGACGGCATTGATCATGCAAAAGGTGTTTATGGTTACGATGCACCAGCATTTACAGTTCCAGATGAAGTCG
CTCGTCGTTTTGAAGTTGGTATTAAATTCCGTGGTGAAGCTGCTGAAAATGCTTGGCAAACTAAATTTGCAGAATATGAA
ACTGCTTACCCAGAATTGGCTGCTGAATACAAGGCTGCCTTTGCAAATGAACCTGTACACGTTAACTTGAATGCTCATGA
ATTGGGTTCAGCAGTAGCTAGCCGTGTATCAAGTCAACAAGCTATCCAACAGATTTCAGAACAAGTTCCTTCATTCTGGG
GAGGTTCAGCAGACCTTTCAGCTTCTAACAATACTATGGTTAAGGCTGAGTCTGATTTCCAAGCAGACAACTATGCTGGA
CGTAATATTTGGTTTGGTGTGCGTGAGTTTGCTATGGCTGCAGCGATGAATGGTATTGCTCTTCATGGTGGTACTCGTGT
TTATGGTGGTACCTTCTTCGTCTTCTCAAACTACTTGCTTCCAGCAGTGCGTATGGCAGCTCTTCAAAACTTGCCAGTAA
CTTATGTTATGACACACGACTCAGTAGCAGTTGGTGAAGATGGACCTACTCACGAACCAATCGAACAATTGGCAAGTGTG
CGTTCAATGCCTAACCTTAACGTTATCCGTCCTGCAGATGGTAATGAAACTAATGCTGCATGGAAACGTGCCTTGGCTGA
GACTGAACGTCCAACAATGCTAGTCTTGACACGTCAAAACTTGCCAGTCCTTGATGGTACTGCTGAAAATGCTGAAACTG
GTGTCAATAAAGGAGCTTACATCATCTCAGAAGCAAAAGGTGATCTTGATGGTATCATCATTGCAACTGGTTCTGAAGTG
AAATTGGCTCTTGATACGCAGGCTGCTCTTGAAGCTGAAGGTGTGCATGTTCGTGTTGTTTCAATGCCATCACAAAACCT
CTTTGATGAACAAGATGCTGCATATAAAGAAGAAGTCCTTCCAACAGCTGTGACAAAACGTTTGGCTATCGAAGCTGGAA
CTAGCTTTGGTTGGGGCAAATACGTTGGTCTTGCAGGTAAAACACTTACTATTGATACTTGGGGTGCCTCAGCACCTGGA
GACCGTATCTTTAAAGAATATGGTTTCACTGTTGAAAATGCAAGTCAACTTTACAAATCATTGTAA

Domains

Predicted by InterProScan.

Transketolase, thiamine diphosphate binding domain (Transketolase_N)

(6-334)

Transketolase, pyrimidine binding domain (Transket_pyr)

(352-522)

Transketolase, C-terminal domain (Transketolase_C)

(552-652)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recP/tkt Streptococcus pneumoniae TIGR4

56.535

99.546

0.563