Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   MHH64_RS12865 Genome accession   NZ_CP150287
Coordinates   2605393..2607711 (+) Length   772 a.a.
NCBI ID   WP_340001872.1    Uniprot ID   -
Organism   Oceanobacillus sp. FSL K6-0127     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2600393..2612711
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MHH64_RS12845 (MHH64_12845) - 2601601..2602020 (+) 420 WP_095307143.1 Rrf2 family transcriptional regulator -
  MHH64_RS12850 (MHH64_12850) - 2602163..2603305 (+) 1143 WP_340001871.1 cysteine desulfurase family protein -
  MHH64_RS12855 (MHH64_12855) mnmA 2603416..2604528 (+) 1113 WP_095307141.1 tRNA 2-thiouridine(34) synthase MnmA -
  MHH64_RS12860 (MHH64_12860) - 2604544..2605212 (+) 669 WP_095307140.1 tetratricopeptide repeat protein -
  MHH64_RS12865 (MHH64_12865) recD2 2605393..2607711 (+) 2319 WP_340001872.1 ATP-dependent RecD-like DNA helicase Machinery gene
  MHH64_RS12870 (MHH64_12870) - 2607778..2607966 (+) 189 WP_095307137.1 hypothetical protein -
  MHH64_RS12875 (MHH64_12875) - 2608023..2609090 (+) 1068 WP_095307136.1 AI-2E family transporter -
  MHH64_RS12880 (MHH64_12880) alaS 2609551..2612196 (+) 2646 WP_340001873.1 alanine--tRNA ligase -
  MHH64_RS12885 (MHH64_12885) - 2612346..2612612 (+) 267 WP_095307133.1 IreB family regulatory phosphoprotein -

Sequence

Protein


Download         Length: 772 a.a.        Molecular weight: 87734.03 Da        Isoelectric Point: 4.8765

>NTDB_id=969608 MHH64_RS12865 WP_340001872.1 2605393..2607711(+) (recD2) [Oceanobacillus sp. FSL K6-0127]
MEQDQQTIDEQGYIKGEILYTIFHNETEHFSIIKIRVQDTNEDFKEKEIVAKGYFSNLQEQTPYFFYGTFERHARFGLQY
KVSSYKTIVPNTKDGLVAYLSSDLFYGIGKKTAERIVEHLGETAITQILNDGSILQGVPGLKKETAERLASSIQENQGFE
HVAVYLANYGVGLKMAQRIYKEYKDEAIEVLEEDPYQYVFAIEGFGFRTADDIARQNGLSMTHPNRIGAGCIYILQKCIQ
DGHVYLPIELCVDQVGELLSIHSEEVRIITEQMEELNKEKKVIMKDTKVYLPSLYYAEDGFAANLKRIMEKPIKDETPLA
EMMKITGDIEESEVLSYGKEQFSAINQSLHSKVMILTGGPGTGKTTVIKGILKAYATIHDVSLNPKDYDDPAEFPFVLTA
PTGRAAKRLNESTGLPALTIHRLLGWNGSNGFNKDEQEQLSGKILIVDEFSMVDIWLANSLFKAIPDEMQVLLVGDEDQL
PSVGPGQVLTDLLNSKLLPLVRLNEVYRQKEGSKIIQLAHEIKNNQLTVQSLQNDKDFSFIACNEHQMLQVVTSIFTKAK
EKGLDVKEIQVLAPMYRSQAGITMINQQLQQLINPKTKTKREVKYHDVVYRVGDKVIQLVNQPEDGVYNGDIGEVVAIFR
EEENVDNVEQVVIAFDDKEVVYERNNYINFTHAYCISIHKSQGSEFPIVILPVVSTYYRMLRKNLLYTAITRSKESLIIC
GEQQAFLKGIQTMDTNKRYTSLKEQLSGRMKDLKMEEAEEVDEEEISPYDFM

Nucleotide


Download         Length: 2319 bp        

>NTDB_id=969608 MHH64_RS12865 WP_340001872.1 2605393..2607711(+) (recD2) [Oceanobacillus sp. FSL K6-0127]
ATGGAACAGGATCAACAAACAATAGATGAACAAGGGTATATTAAAGGAGAAATATTGTATACCATTTTTCATAATGAAAC
AGAGCATTTTTCTATCATTAAGATCCGAGTTCAGGATACAAATGAAGATTTTAAAGAAAAAGAGATTGTTGCAAAAGGCT
ATTTTTCCAACCTCCAAGAGCAAACCCCCTATTTCTTTTATGGAACGTTTGAAAGACATGCCAGGTTTGGATTGCAGTAT
AAGGTTTCTTCCTATAAAACGATTGTACCAAATACAAAGGATGGTTTAGTAGCCTATTTATCAAGCGATCTCTTTTATGG
TATCGGGAAAAAGACTGCGGAACGAATCGTTGAGCATTTAGGTGAAACAGCAATCACCCAAATTTTGAATGATGGAAGTA
TTTTGCAAGGTGTACCAGGACTTAAAAAGGAAACTGCTGAACGTTTAGCATCGAGTATACAGGAGAATCAAGGATTTGAA
CATGTTGCAGTTTATTTGGCCAACTATGGTGTTGGTTTAAAAATGGCACAGCGTATTTATAAAGAATATAAAGATGAAGC
TATTGAAGTTTTAGAAGAAGATCCGTACCAGTATGTCTTCGCAATAGAAGGATTTGGTTTTCGGACAGCAGATGACATTG
CAAGACAGAATGGATTATCGATGACACACCCAAATCGAATTGGAGCTGGGTGTATTTATATCCTGCAAAAATGTATTCAG
GATGGTCATGTATATCTTCCTATAGAACTTTGTGTAGACCAAGTTGGAGAGCTACTTAGCATCCATTCCGAAGAGGTTCG
TATTATTACTGAACAAATGGAAGAATTGAATAAAGAGAAGAAAGTTATCATGAAAGATACTAAGGTGTACCTACCTTCGC
TTTATTATGCAGAAGATGGCTTTGCAGCGAATTTAAAACGGATTATGGAGAAGCCCATTAAAGATGAAACACCGCTAGCT
GAAATGATGAAAATAACGGGTGATATTGAAGAATCGGAAGTACTTAGCTATGGGAAAGAACAGTTTTCTGCGATTAATCA
GTCGTTGCATTCAAAAGTAATGATTCTAACCGGTGGACCTGGAACTGGAAAGACAACGGTTATTAAAGGGATTTTAAAAG
CATATGCGACAATACATGATGTTTCACTTAATCCGAAAGATTATGATGATCCAGCTGAATTTCCATTCGTTTTAACTGCG
CCAACAGGCAGAGCTGCAAAACGCTTGAATGAGTCGACTGGTCTTCCAGCACTGACCATTCATAGACTACTGGGTTGGAA
TGGGAGCAATGGGTTCAATAAGGATGAACAAGAACAGCTATCCGGAAAAATTCTAATTGTTGATGAGTTTTCCATGGTAG
ATATTTGGCTTGCGAACAGTTTATTTAAGGCAATTCCAGATGAAATGCAAGTATTGCTTGTTGGTGATGAAGACCAGCTT
CCATCTGTTGGACCTGGACAAGTATTAACAGATTTATTAAATAGTAAATTACTACCGCTAGTTCGTCTGAATGAAGTATA
CCGCCAAAAAGAAGGATCGAAAATCATTCAGCTCGCACATGAAATAAAAAATAATCAACTGACAGTCCAATCGTTACAGA
ATGATAAAGATTTTAGTTTTATTGCATGTAATGAACATCAAATGCTTCAAGTAGTAACATCAATTTTCACAAAGGCTAAA
GAGAAAGGACTTGATGTCAAGGAGATTCAAGTATTGGCTCCTATGTATCGAAGTCAGGCAGGGATCACGATGATTAATCA
ACAGTTACAGCAGTTGATTAATCCAAAAACAAAAACGAAGCGGGAAGTAAAGTACCATGATGTGGTTTACCGAGTTGGAG
ATAAAGTGATTCAGCTTGTCAATCAACCAGAGGATGGCGTATATAATGGCGATATTGGAGAAGTTGTTGCTATTTTTCGA
GAGGAAGAGAATGTAGATAATGTAGAGCAGGTTGTGATTGCTTTTGATGATAAAGAAGTTGTTTATGAACGAAACAACTA
TATTAATTTTACACATGCTTATTGTATTTCGATTCATAAGTCACAAGGCAGTGAATTTCCAATTGTAATTCTTCCGGTTG
TATCAACCTATTATCGAATGCTGCGAAAAAATTTATTGTACACAGCAATTACGAGAAGCAAAGAGTCTTTAATTATTTGT
GGTGAACAACAGGCATTTTTAAAAGGGATTCAAACAATGGATACAAATAAACGCTATACGTCCTTGAAAGAGCAATTAAG
TGGAAGAATGAAAGATTTGAAAATGGAAGAAGCCGAAGAAGTGGATGAGGAAGAAATCTCACCGTATGATTTCATGTAA

Domains

Predicted by InterproScan.

UvrD-like helicase C-terminal domain (UvrD_C_2)

(672-720)

AAA domain (AAA_30)

(337-544)

Helix-hairpin-helix domain (HHH_5)

(107-154)

Helix-hairpin-helix containing domain (HHH_RecD2)

(155-245)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(585-655)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

47.589

100

0.486

Multiple sequence alignment