Detailed information    

insolico Bioinformatically predicted

Overview

Name   xerS   Type   Machinery gene
Locus tag   ACJVG6_RS04885 Genome accession   NZ_CP177180
Coordinates   1064721..1065791 (-) Length   356 a.a.
NCBI ID   WP_004182528.1    Uniprot ID   -
Organism   Streptococcus salivarius strain MRD-KRBY     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1059721..1070791
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACJVG6_RS04870 pstB 1060444..1061202 (+) 759 WP_002890956.1 phosphate ABC transporter ATP-binding protein PstB -
  ACJVG6_RS04875 phoU 1061231..1061884 (+) 654 WP_004182526.1 phosphate signaling complex protein PhoU -
  ACJVG6_RS04880 - 1062018..1064558 (+) 2541 WP_004182527.1 M1 family metallopeptidase -
  ACJVG6_RS04885 xerS 1064721..1065791 (-) 1071 WP_004182528.1 tyrosine recombinase XerS Machinery gene
  ACJVG6_RS04890 - 1066049..1067038 (-) 990 WP_004182529.1 lipoate--protein ligase -
  ACJVG6_RS04895 - 1067385..1068038 (+) 654 WP_004182531.1 hypothetical protein -
  ACJVG6_RS04900 - 1068183..1069169 (-) 987 WP_002886406.1 IS30 family transposase -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41411.50 Da        Isoelectric Point: 9.3734

>NTDB_id=969595 ACJVG6_RS04885 WP_004182528.1 1064721..1065791(-) (xerS) [Streptococcus salivarius strain MRD-KRBY]
MKRELLLEKIEEYKSLMPWFVLEYYQSKLSVPYSFTTLYEYLKEYKRFFDWLIDSGISDADDIASIDIKTLENLTKKDME
SFVLYLRERPSLNTYSKKQGVSQTTINRTLSALSSLYKYLTEEVEGPDGEPYFYRNVMKKVSTKKKKETLAARAENIKQK
LFLGDETMEFLDYVENEYEVKLSNRAKSSFYKNKERDLAIIALLLASGVRLSEAVNLDLKDINLKMMVIDVTRKGGKRDS
VNVASFAKPYLETYLSIRDKRYKAEKQDVALFLTEYRGIPNRIDASSIEKMVAKYSQDFKIRVTPHKLRHTLATRLYDAT
KSQVLVSHQLGHASTQVTDLYTHIVNDEQKNALDNL

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=969595 ACJVG6_RS04885 WP_004182528.1 1064721..1065791(-) (xerS) [Streptococcus salivarius strain MRD-KRBY]
ATGAAACGTGAACTCTTACTCGAAAAAATTGAAGAATACAAATCTCTGATGCCCTGGTTTGTCTTGGAGTATTATCAATC
TAAACTATCGGTTCCATATTCTTTTACGACCTTATACGAATACCTTAAGGAATATAAACGCTTTTTTGACTGGTTAATTG
ACTCAGGTATTTCAGATGCTGATGATATTGCCTCAATTGACATCAAAACCTTGGAAAATCTAACTAAAAAAGATATGGAG
TCATTTGTGCTTTATCTACGTGAACGTCCATCTTTAAATACCTATTCCAAGAAACAGGGAGTTTCACAAACAACTATTAA
TCGGACGCTTTCAGCTCTATCTAGTCTCTATAAGTATTTAACGGAGGAGGTCGAGGGACCTGACGGCGAGCCATATTTCT
ATCGTAACGTTATGAAAAAAGTTTCTACTAAGAAAAAGAAAGAAACCTTGGCTGCACGTGCTGAGAATATCAAACAGAAA
CTCTTTCTTGGCGATGAAACCATGGAATTTCTTGATTATGTAGAAAATGAATACGAAGTCAAGCTCTCAAATCGCGCCAA
ATCTTCGTTTTATAAGAATAAAGAGCGTGATTTGGCTATCATTGCCTTGCTGCTGGCTTCAGGTGTTCGACTCTCTGAAG
CTGTTAATCTGGACCTTAAAGATATCAATCTAAAAATGATGGTCATCGACGTCACTCGAAAAGGTGGCAAACGTGACTCA
GTTAATGTAGCAAGTTTTGCAAAGCCCTATCTTGAAACTTATCTCAGTATACGTGATAAACGCTATAAGGCTGAAAAGCA
AGATGTTGCTCTCTTTTTAACGGAATATCGAGGGATCCCAAACCGTATTGATGCTTCAAGTATCGAAAAAATGGTTGCCA
AATATTCTCAGGATTTCAAGATTCGCGTCACTCCCCATAAACTACGACATACTTTGGCAACACGTCTTTATGATGCCACC
AAGTCTCAAGTTTTAGTGAGTCACCAACTTGGCCATGCTTCCACTCAGGTTACCGATCTTTACACACATATTGTTAATGA
TGAGCAAAAAAATGCTCTAGACAATTTATAA

Domains

Predicted by InterProScan.

Phage integrase family (Phage_integrase)

(183-344)

Phage integrase, N-terminal SAM-like domain (Phage_int_SAM_4)

(33-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xerS Streptococcus pneumoniae R6

83.146

100

0.831