Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   MHB78_RS21445 Genome accession   NZ_CP150286
Coordinates   4067164..4067853 (-) Length   229 a.a.
NCBI ID   WP_046130088.1    Uniprot ID   -
Organism   Bacillus sp. FSL K6-0138     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 4062164..4072853
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MHB78_RS21410 (MHB78_21410) - 4062318..4062794 (-) 477 WP_046130082.1 flagellar protein FlgN -
  MHB78_RS21415 (MHB78_21415) flgM 4062816..4063082 (-) 267 WP_046130083.1 flagellar biosynthesis anti-sigma factor FlgM -
  MHB78_RS21420 (MHB78_21420) - 4063162..4063581 (-) 420 WP_046130084.1 TIGR03826 family flagellar region protein -
  MHB78_RS21425 (MHB78_21425) - 4063639..4064327 (-) 689 Protein_4177 phosphoribosyltransferase family protein -
  MHB78_RS21430 (MHB78_21430) - 4064315..4064617 (-) 303 WP_046130085.1 competence protein ComFB -
  MHB78_RS21435 (MHB78_21435) comFA 4064673..4066082 (-) 1410 WP_046130086.1 DEAD/DEAH box helicase Machinery gene
  MHB78_RS21440 (MHB78_21440) - 4066201..4067043 (-) 843 WP_065894697.1 DegV family protein -
  MHB78_RS21445 (MHB78_21445) degU 4067164..4067853 (-) 690 WP_046130088.1 two-component system response regulator DegU Regulator
  MHB78_RS21450 (MHB78_21450) degS 4067936..4069093 (-) 1158 WP_046130089.1 histidine kinase Regulator
  MHB78_RS21455 (MHB78_21455) - 4069313..4069951 (+) 639 WP_046130090.1 YigZ family protein -
  MHB78_RS21460 (MHB78_21460) - 4069966..4071057 (+) 1092 WP_046130091.1 LCP family protein -
  MHB78_RS21465 (MHB78_21465) - 4071109..4072173 (-) 1065 WP_046130092.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25860.54 Da        Isoelectric Point: 5.9436

>NTDB_id=969577 MHB78_RS21445 WP_046130088.1 4067164..4067853(-) (degU) [Bacillus sp. FSL K6-0138]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVDMYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSSHAQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=969577 MHB78_RS21445 WP_046130088.1 4067164..4067853(-) (degU) [Bacillus sp. FSL K6-0138]
GTGACTAAAGTAAATATTGTAATTATTGATGACCATCAGTTATTCCGTGAAGGAGTAAAACGGATTTTGGATTTCGAACC
TACCTTTGAGGTAGTGGCTGAAGGAGACGACGGTGACGAAGCGGCTCGCATTGTCGAGCACTATCATCCGGATGTAGTCA
TCATGGACATCAATATGCCGAATGTAAACGGAGTTGAAGCGACAAAACAACTTGTCGATATGTATCCGGAATCAAAGGTC
ATAATTTTATCGATCCATGATGATGAAAACTATGTGACACATGCGTTAAAAACCGGAGCACGCGGCTATCTGCTTAAAGA
GATGGATGCCGATACACTGATTGAAGCCGTAAAGGTAGTGGCTGAAGGCGGTTCTTACCTTCACCCTAAGGTTACGCACA
ATCTTGTCAACGAATTTCGCCGTCTGGCAACAAGCGGCGTGTCATCTCACGCTCAGCACGAAGTGTATCCAGAAATCCGC
AGACCTTTGCACATTCTCACAAGGCGGGAATGCGAAGTATTGCAAATGCTCGCGGACGGAAAGAGCAACCGCGGCATAGG
AGAATCTTTATTTATCAGTGAAAAAACGGTTAAAAACCACGTCAGCAACATCCTGCAGAAAATGAACGTAAACGACAGAA
CTCAAGCAGTCGTTGTGGCCATCAAAAATGGCTGGGTAGAAATGAGATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

98.253

100

0.983

Multiple sequence alignment