Detailed information    

insolico Bioinformatically predicted

Overview


Name   addA   Type   Machinery gene
Locus tag   MHB78_RS17790 Genome accession   NZ_CP150286
Coordinates   3350391..3354083 (-) Length   1230 a.a.
NCBI ID   WP_046131291.1    Uniprot ID   A0AAE2JVM9
Organism   Bacillus sp. FSL K6-0138     
Function   homologous recombination; plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context


Location: 3345391..3359083
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MHB78_RS17775 (MHB78_17775) - 3345473..3345691 (+) 219 WP_046131288.1 spore germination protein -
  MHB78_RS17780 (MHB78_17780) sbcC 3345750..3349142 (-) 3393 WP_046131289.1 exonuclease subunit SbcC -
  MHB78_RS17785 (MHB78_17785) sbcD 3349139..3350323 (-) 1185 WP_046131290.1 exonuclease subunit SbcD -
  MHB78_RS17790 (MHB78_17790) addA 3350391..3354083 (-) 3693 WP_046131291.1 helicase-exonuclease AddAB subunit AddA Machinery gene
  MHB78_RS17795 (MHB78_17795) addB 3354070..3357570 (-) 3501 WP_046131292.1 helicase-exonuclease AddAB subunit AddB Machinery gene
  MHB78_RS17800 (MHB78_17800) modB 3357679..3358335 (-) 657 WP_046131293.1 molybdate ABC transporter permease subunit -

Sequence


Protein


Download         Length: 1230 a.a.        Molecular weight: 141344.16 Da        Isoelectric Point: 5.4779

>NTDB_id=969567 MHB78_RS17790 WP_046131291.1 3350391..3354083(-) (addA) [Bacillus sp. FSL K6-0138]
METAKPKNSTWTDDQWKAIVSSGRDILVAAAAGSGKTAVLVERIIRKITAEENPIDVDRLLVVTFTNASAAEMKHRIGEA
LEKKLAENPGSLHLRRQLSLLNRASISTLHSFCLQVVRKYYYMIDVDPAFRIADQTEGELLGDEVLDELFEEEYQKGDPA
FFELVDRYTTDRHDLDLQYLIKRVYEFSRSHPDPEAWLEKFMNLYDADPGAKIESLPFYSYIREDIALVLNSVREKLTRA
LELTKRPGGPAPRAENFLDDLAQIDKLLEHQDDFEALYELVPAVSFQRAKPCKGDDFDPSLIDEATDLRNSAKKMLEKLK
GDYFTRTPEQHLESLKEMKPVIRTLVQLVAEFGRRYRAAKKEKAIVDFSDLEHDCLAILTKKNEGGTTEPSEAAAYYRHL
FHEVLVDEYQDTNLVQEAILKLVAKEEHEGNLFMVGDVKQSIYRFRLAEPLLFLSKYKRFTDDGSGAGQKIDLNKNFRSR
SDILDSTNFLFKQLMGEKVGEVVYDEQAELKLGASYPPNESTKTEVLIIENGEDAADEEAEELETVQLEARAVAGRVREL
ISGKFQVYDGKTKTTRNIQYRDIVILLRSMPWAPQFMDEFKQQGIPVYANLSTGYFEATEVAVTLSLLKVIDNAYQDIPL
ASVLRSPIVGLDENELSLIRIRDKKAPFYEALKAYMASADRDDPLYEKLARFDGFLKKWRAYAKNHSVAELIWEVYRDTK
YIDYVGGMPGGKQRQANLRALYDRARSYESTSFRGLFRFLRFIERMQERGDDLGTARALSEQEDVVRLMTIHSSKGLEFP
VVFTAGLGRNFNMMDLNKSYLLDKELGFGTKFIHPKWRISYPTLPLVAMKKKMRRELLSEELRVLYVALTRAKEKLFLVG
TAKDKDKLLAKWRTSASHAEWLLPDFERFQAKSYLDFIGPALMRHRDMADGDLNLPNDDIRQHPSRFTISWISAGELQAE
DRAQTEEEKHERLSLVKKGLPIDGAFDYEKEVRERLTWSYPFRDASQVRTKQSVSEIKRQKEYEDEYGDRSLIRPANETL
LFRRPSFMMAKGLTAAERGTAMHTVMQHLPLTRVPEKDELGRLLDMLIEKELLTEEQRAAIEEDDILAFFDTDIGGKLLG
ARRVEREVPFNMTLPAREVYPGFKTADDPVLIQGIIDCLFETDDGFYLLDYKTDRIHGKFQNGFEGAEPILRKRYETQIN
LYARAVETMLKTPLRGKALYFFDGGHVILF

Nucleotide


Download         Length: 3693 bp        

>NTDB_id=969567 MHB78_RS17790 WP_046131291.1 3350391..3354083(-) (addA) [Bacillus sp. FSL K6-0138]
ATGGAAACGGCTAAGCCGAAAAACAGCACATGGACGGACGACCAATGGAAAGCGATCGTCTCATCCGGCCGGGATATTTT
GGTCGCCGCTGCGGCGGGCTCCGGAAAAACGGCCGTCCTTGTCGAGCGGATCATCCGAAAGATTACGGCAGAGGAAAATC
CGATCGATGTCGACCGGCTGCTCGTCGTCACCTTTACGAATGCATCGGCGGCGGAGATGAAACACCGGATCGGTGAAGCG
CTTGAGAAAAAGCTCGCCGAAAACCCCGGCTCCCTTCATTTGCGCAGGCAGCTTTCCTTGCTGAACAGGGCGAGCATTTC
GACATTGCATTCTTTTTGTCTTCAGGTCGTCCGCAAGTATTATTATATGATCGACGTTGATCCGGCTTTTCGGATCGCCG
ATCAGACAGAAGGCGAGCTGCTCGGCGATGAGGTCCTTGACGAGCTGTTTGAAGAAGAATATCAAAAAGGCGACCCGGCT
TTTTTTGAGCTGGTGGACAGATATACGACAGACCGCCACGATCTCGATTTGCAGTACCTTATCAAACGGGTTTACGAGTT
TTCCCGCTCACATCCCGACCCGGAAGCGTGGCTTGAAAAATTTATGAACCTGTACGACGCAGATCCCGGCGCGAAGATCG
AGTCGCTGCCGTTTTATTCCTACATCAGGGAAGATATCGCGCTTGTGTTGAACAGTGTGCGGGAAAAGCTGACCCGCGCG
CTTGAGCTGACAAAACGGCCGGGGGGGCCGGCTCCGCGCGCTGAAAACTTTCTCGACGATTTGGCGCAGATCGACAAGCT
GCTTGAGCATCAGGATGATTTTGAGGCCCTTTATGAGCTTGTGCCGGCTGTTTCGTTTCAGCGGGCCAAACCGTGCAAAG
GGGATGATTTCGATCCGTCTTTAATCGACGAAGCGACAGACCTTCGGAACAGTGCAAAAAAAATGCTTGAAAAGCTGAAA
GGCGACTATTTCACCCGAACGCCGGAGCAGCATTTGGAGAGTTTGAAGGAGATGAAGCCCGTCATCAGGACGCTTGTCCA
GCTCGTCGCAGAGTTCGGCAGACGCTATAGAGCGGCGAAGAAAGAAAAAGCCATCGTCGACTTCTCCGATCTTGAGCACG
ACTGCCTGGCGATTTTGACAAAGAAAAACGAAGGCGGGACAACGGAGCCGAGCGAAGCTGCGGCCTATTACCGGCACTTG
TTCCACGAAGTGCTCGTCGATGAGTATCAGGATACAAACCTTGTACAGGAGGCGATTTTAAAGCTTGTCGCCAAGGAGGA
GCACGAAGGAAACCTTTTTATGGTGGGCGATGTCAAGCAGTCGATCTACCGTTTCCGGCTGGCTGAGCCGCTTTTGTTTC
TTTCGAAATACAAGCGGTTCACAGATGACGGTTCAGGCGCCGGACAGAAAATCGATTTGAACAAAAACTTCAGAAGCCGG
TCCGACATTTTGGATAGCACCAATTTTTTGTTTAAACAGCTGATGGGGGAGAAGGTCGGCGAGGTTGTCTATGACGAACA
AGCCGAATTAAAGCTCGGCGCATCGTATCCTCCCAATGAGAGCACAAAAACAGAGGTGCTGATCATTGAAAATGGGGAAG
ATGCGGCTGATGAAGAGGCAGAAGAGCTTGAAACGGTTCAGCTTGAGGCAAGGGCTGTCGCCGGACGGGTCAGAGAGCTG
ATTTCCGGCAAATTTCAAGTGTATGACGGCAAAACGAAAACGACAAGAAACATCCAGTACCGCGACATCGTGATTTTGCT
GCGCTCCATGCCGTGGGCGCCGCAATTCATGGACGAGTTCAAGCAGCAGGGGATTCCGGTATACGCGAATCTGTCAACCG
GATATTTCGAAGCGACAGAAGTAGCCGTTACGCTTTCACTGCTTAAAGTCATCGACAATGCCTACCAGGATATTCCGCTT
GCATCCGTCCTCAGGTCACCGATTGTCGGCCTTGATGAAAACGAACTGTCCCTGATCAGAATCCGGGATAAAAAAGCGCC
GTTCTATGAAGCGCTGAAGGCGTATATGGCGTCAGCGGACAGGGATGATCCGCTTTATGAAAAGCTTGCCCGCTTTGACG
GGTTCCTGAAGAAGTGGAGGGCATACGCAAAAAACCATTCCGTGGCAGAGCTGATATGGGAAGTTTACCGCGATACGAAA
TATATCGATTATGTCGGCGGAATGCCGGGCGGAAAGCAGCGGCAAGCCAATTTGCGCGCGCTCTATGACAGGGCGAGATC
GTACGAATCGACCTCCTTCCGCGGATTGTTCCGCTTTTTGCGATTTATTGAACGGATGCAGGAGCGGGGCGATGACCTCG
GAACGGCGCGGGCTTTGAGCGAACAGGAAGACGTCGTCCGCCTGATGACGATCCATTCGAGCAAAGGCCTTGAATTTCCC
GTCGTATTCACGGCGGGCCTCGGCCGGAATTTCAATATGATGGATCTCAACAAATCGTATCTGCTTGATAAAGAGCTCGG
GTTCGGGACGAAATTTATCCATCCGAAATGGCGCATCAGCTATCCGACGCTGCCGCTTGTGGCGATGAAGAAAAAAATGC
GGCGCGAGCTTTTATCAGAAGAGCTCCGCGTCTTGTATGTCGCTCTCACCCGTGCAAAGGAAAAACTCTTTTTGGTCGGA
ACGGCGAAAGACAAGGACAAGCTTTTGGCAAAATGGCGGACCTCCGCCTCCCATGCCGAATGGCTGCTTCCTGATTTCGA
ACGCTTTCAGGCGAAATCGTATCTCGATTTTATCGGCCCAGCTTTAATGCGGCACAGGGATATGGCAGACGGTGATCTGA
ATTTGCCGAATGATGACATCCGTCAGCATCCGTCCCGTTTTACGATCAGCTGGATATCAGCAGGAGAGCTGCAGGCCGAA
GATAGAGCGCAGACTGAAGAAGAAAAACACGAACGGCTGTCACTGGTAAAAAAAGGGCTGCCGATCGATGGGGCTTTCGA
TTATGAAAAAGAAGTCCGCGAACGGCTGACATGGTCGTATCCTTTCCGGGATGCGTCACAGGTCCGCACAAAACAGTCTG
TCTCCGAAATCAAGAGACAGAAGGAGTACGAGGATGAGTACGGCGACCGTTCATTGATTCGTCCGGCAAATGAAACTTTG
CTGTTCAGAAGACCCTCTTTCATGATGGCAAAAGGGCTGACCGCCGCTGAGCGGGGAACGGCAATGCATACAGTCATGCA
GCATCTTCCGCTCACTCGCGTCCCCGAAAAGGATGAGCTCGGCCGTCTGCTGGACATGCTTATCGAAAAAGAGCTTCTAA
CGGAAGAGCAACGCGCAGCTATCGAAGAAGATGACATTCTCGCGTTTTTTGATACGGATATAGGCGGAAAACTGCTTGGC
GCCCGCCGGGTTGAGCGGGAAGTGCCCTTCAACATGACGCTGCCTGCACGAGAGGTTTATCCAGGCTTCAAGACTGCCGA
TGACCCCGTCTTAATTCAAGGGATTATCGACTGCTTGTTCGAAACCGATGACGGCTTTTATTTGCTTGACTACAAAACCG
ACCGGATACACGGCAAATTTCAAAACGGCTTTGAAGGAGCGGAGCCGATTTTACGAAAACGCTACGAGACGCAGATCAAC
CTTTACGCCCGGGCTGTCGAAACGATGCTTAAGACGCCTCTGAGAGGAAAGGCTCTTTACTTTTTCGACGGCGGGCACGT
GATCCTGTTTTGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  addA Bacillus subtilis subsp. subtilis str. 168

73.74

100

0.737


Multiple sequence alignment