Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   MHB78_RS17355 Genome accession   NZ_CP150286
Coordinates   3263339..3265156 (-) Length   605 a.a.
NCBI ID   WP_281503742.1    Uniprot ID   -
Organism   Bacillus sp. FSL K6-0138     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 3258339..3270156
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MHB78_RS17320 (MHB78_17320) - 3258727..3259362 (-) 636 WP_046131201.1 GTP pyrophosphokinase family protein -
  MHB78_RS17325 (MHB78_17325) - 3259393..3259758 (-) 366 WP_046131202.1 hypothetical protein -
  MHB78_RS17330 (MHB78_17330) - 3259887..3260459 (+) 573 WP_046131203.1 CYTH domain-containing protein -
  MHB78_RS17335 (MHB78_17335) - 3260472..3261137 (+) 666 WP_046131204.1 lytic transglycosylase domain-containing protein -
  MHB78_RS17340 (MHB78_17340) - 3261422..3261820 (+) 399 WP_046131205.1 thiol management oxidoreductase -
  MHB78_RS17345 (MHB78_17345) spxH 3261817..3262710 (+) 894 WP_046131206.1 protease adaptor protein SpxH -
  MHB78_RS17350 (MHB78_17350) - 3263119..3263286 (+) 168 WP_046131207.1 hypothetical protein -
  MHB78_RS17355 (MHB78_17355) pepF 3263339..3265156 (-) 1818 WP_281503742.1 oligoendopeptidase F Regulator
  MHB78_RS17360 (MHB78_17360) - 3265369..3266517 (-) 1149 WP_046131209.1 competence protein CoiA family protein -
  MHB78_RS17365 (MHB78_17365) mecA 3266639..3267277 (-) 639 WP_046131210.1 adaptor protein MecA Regulator
  MHB78_RS17370 (MHB78_17370) - 3267259..3267384 (-) 126 Protein_3388 hypothetical protein -
  MHB78_RS17375 (MHB78_17375) - 3267536..3268198 (+) 663 WP_046131211.1 TerC family protein -
  MHB78_RS17380 (MHB78_17380) spxA 3268247..3268642 (-) 396 WP_046131212.1 transcriptional regulator SpxA -
  MHB78_RS17385 (MHB78_17385) - 3268819..3269397 (-) 579 WP_046131213.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 605 a.a.        Molecular weight: 69942.49 Da        Isoelectric Point: 4.7538

>NTDB_id=969560 MHB78_RS17355 WP_281503742.1 3263339..3265156(-) (pepF) [Bacillus sp. FSL K6-0138]
MAEENQTKKLPARDEVKQEDTWRLEDIFSSDEAWNKEFQAVKELLPKLSEFKGKLGHSADDLYEALTYQDKVMERLGKLY
TYAHMRYDQDTGNSFYQGLNDKASNLYTQAASATAYMVPEILSIQEDKLQQFLLEKEELKLYSHALEEINKERPHVLSEE
EEGLLAEASDVLSSPSTTFGMLNNADMEFPEITDEDGEKRQLTHGNYITFLESENRDVRREAFKAVYDTYGRFKNTLAST
LSGAVKKDNFYAKVKHYKSAREAALSRNSIPEEVYDNLVETINKYLPLLHRYVELRKQVLELDEVHMYDLYTPLVKDAGM
KVTYEQAKDYMLKGLAPLGEEYSSILKEGLNNRWVDVYENKGKRSGAYSSGTYGTNPYILMNWQDNVNNLFTLVHEFGHS
VHSYYTRKHQPYPYGNYSIFVAEVASTTNEALLGDYLLNTVDDEKQRLYILNHMLEGFKGTVFRQTMFAEFEHAIHVKAQ
EGEPLTPELLTSIYYDLNKKYFGENIEIDKEIGLEWARIPHFYYNYYVYQYATGYSAAQALSQQILKEGKPAVDRYIEFL
KAGSSDYPIEVLKKAGVDMTSSEPIEAACKKFEEQLNEMEELLLK

Nucleotide


Download         Length: 1818 bp        

>NTDB_id=969560 MHB78_RS17355 WP_281503742.1 3263339..3265156(-) (pepF) [Bacillus sp. FSL K6-0138]
GTGGCTGAAGAAAATCAAACGAAAAAACTGCCTGCAAGAGATGAGGTGAAGCAAGAAGACACGTGGAGACTTGAGGATAT
CTTTTCATCCGATGAAGCTTGGAACAAGGAATTTCAAGCGGTCAAAGAGCTGCTGCCTAAGCTTTCCGAATTCAAGGGAA
AGCTCGGTCATTCCGCCGACGATCTATATGAAGCATTGACATATCAGGACAAAGTCATGGAAAGGCTCGGCAAGCTGTAT
ACTTACGCCCATATGCGCTATGATCAGGACACCGGCAATTCGTTTTATCAAGGGTTAAATGACAAAGCGTCCAACCTTTA
TACACAGGCTGCCAGTGCGACGGCCTACATGGTGCCGGAAATTTTATCGATACAGGAGGATAAGCTCCAGCAGTTCCTTT
TGGAAAAAGAGGAACTGAAGCTCTACTCGCACGCGCTTGAAGAAATCAACAAAGAACGGCCTCATGTGCTGAGCGAAGAG
GAAGAAGGGCTGCTTGCCGAGGCATCGGATGTTCTGTCATCGCCGTCCACTACATTTGGCATGCTCAATAACGCCGATAT
GGAATTTCCGGAAATTACCGATGAAGACGGAGAAAAGCGCCAGCTGACTCACGGGAACTACATCACCTTTTTGGAAAGCG
AGAACCGCGACGTCCGCCGTGAAGCTTTCAAGGCGGTATATGATACGTACGGCCGTTTTAAAAACACCCTTGCATCGACC
CTCAGCGGCGCTGTCAAAAAAGATAATTTTTATGCGAAGGTAAAGCACTATAAATCGGCGAGAGAAGCTGCGCTGTCGCG
CAACAGCATTCCGGAAGAGGTTTATGATAATCTCGTCGAAACGATTAATAAATACTTGCCGCTTCTTCACCGCTATGTGG
AGCTCAGAAAACAAGTGCTCGAACTGGATGAAGTTCACATGTATGACCTGTACACGCCGCTTGTAAAAGATGCCGGCATG
AAAGTGACGTATGAACAAGCGAAAGATTACATGCTGAAAGGGCTCGCTCCTTTAGGGGAGGAATACTCGTCCATCCTGAA
GGAAGGCTTGAACAACCGCTGGGTCGATGTTTACGAAAACAAAGGAAAGCGGAGCGGGGCTTACTCATCAGGAACATACG
GAACAAATCCGTACATTTTGATGAACTGGCAGGACAACGTCAACAACCTGTTTACGCTTGTCCATGAATTCGGCCATTCC
GTCCACAGTTATTATACGAGAAAGCATCAGCCGTATCCGTACGGAAACTACAGCATTTTCGTCGCTGAAGTCGCATCAAC
GACAAATGAAGCCCTTTTAGGGGACTACCTGCTGAACACAGTCGACGACGAAAAGCAGCGGCTGTATATTTTAAACCACA
TGCTTGAAGGCTTTAAAGGAACAGTTTTCAGACAGACGATGTTCGCCGAATTCGAACATGCGATTCATGTCAAAGCCCAG
GAAGGCGAACCGCTGACTCCTGAGCTGCTGACAAGCATCTATTACGATTTGAACAAAAAGTACTTCGGAGAAAACATTGA
AATCGATAAAGAAATCGGTCTTGAATGGGCAAGGATTCCTCATTTCTACTACAATTATTACGTATATCAATACGCGACAG
GCTACAGCGCCGCACAGGCCCTGAGCCAGCAGATTTTAAAAGAAGGGAAGCCGGCTGTTGACCGCTATATCGAATTCTTA
AAAGCCGGAAGCTCCGATTATCCGATTGAAGTACTGAAAAAAGCGGGTGTCGACATGACATCCTCAGAACCGATTGAAGC
TGCATGCAAGAAGTTTGAAGAGCAGCTGAATGAAATGGAAGAGCTTCTCTTGAAATAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(120-189)

Peptidase family M3 (Peptidase_M3)

(210-589)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

51.096

98.017

0.501

Multiple sequence alignment