Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   MHB78_RS16055 Genome accession   NZ_CP150286
Coordinates   3026788..3027375 (-) Length   195 a.a.
NCBI ID   WP_046132264.1    Uniprot ID   -
Organism   Bacillus sp. FSL K6-0138     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3021788..3032375
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MHB78_RS16030 (MHB78_16030) mobB 3022015..3022551 (-) 537 WP_046132259.1 molybdopterin-guanine dinucleotide biosynthesis protein B -
  MHB78_RS16035 (MHB78_16035) glp 3022518..3023810 (-) 1293 WP_046132260.1 gephyrin-like molybdotransferase Glp -
  MHB78_RS16040 (MHB78_16040) - 3023829..3024842 (-) 1014 WP_046132261.1 MoeB/ThiF family adenylyltransferase -
  MHB78_RS16045 (MHB78_16045) - 3024961..3025548 (-) 588 WP_046132262.1 molybdenum cofactor guanylyltransferase -
  MHB78_RS16050 (MHB78_16050) - 3025700..3026659 (+) 960 WP_046132263.1 hypothetical protein -
  MHB78_RS16055 (MHB78_16055) rok 3026788..3027375 (-) 588 WP_046132264.1 transcriptional regulator Rok Regulator
  MHB78_RS16060 (MHB78_16060) - 3027922..3028380 (-) 459 WP_046132265.1 redoxin domain-containing protein -
  MHB78_RS16065 (MHB78_16065) ahpA 3028468..3029010 (-) 543 WP_046132266.1 biofilm-specific peroxidase AhpA -
  MHB78_RS16070 (MHB78_16070) - 3029236..3029481 (-) 246 WP_046132267.1 YkuS family protein -
  MHB78_RS16075 (MHB78_16075) - 3029547..3030671 (-) 1125 WP_046132268.1 N-acetyldiaminopimelate deacetylase -
  MHB78_RS16080 (MHB78_16080) dapD 3030740..3031450 (-) 711 WP_046132269.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase -
  MHB78_RS16085 (MHB78_16085) - 3031559..3032011 (-) 453 WP_046132270.1 flavodoxin -

Sequence

Protein


Download         Length: 195 a.a.        Molecular weight: 22518.54 Da        Isoelectric Point: 10.0936

>NTDB_id=969556 MHB78_RS16055 WP_046132264.1 3026788..3027375(-) (rok) [Bacillus sp. FSL K6-0138]
MFNEREALRLRLEQLNEAEVKVIREYQIERDNIYAKLRELDRPSSFNNDTKKDFRTERKTESLPVLAELAAQEMKSYQQQ
QQMQTSQKTQQQTSPQASALPAGIPDGTTRRRRGTARPGSKAAKLREAAIKTLKRHNAAIKSSELQKEIEKESGLEIPNM
TTFMQSLIKMYPEVKKPYRGQYILEGDISTETEKQ

Nucleotide


Download         Length: 588 bp        

>NTDB_id=969556 MHB78_RS16055 WP_046132264.1 3026788..3027375(-) (rok) [Bacillus sp. FSL K6-0138]
ATGTTTAACGAGAGGGAAGCATTGCGTTTACGATTGGAGCAGCTAAATGAAGCTGAGGTTAAGGTCATTAGGGAGTATCA
AATTGAGCGTGACAATATATATGCAAAGCTGCGTGAATTGGATCGCCCATCCAGCTTTAATAACGATACAAAAAAAGATT
TTCGCACAGAGCGAAAAACCGAATCGCTCCCTGTTTTAGCTGAATTAGCTGCACAGGAGATGAAAAGCTATCAACAGCAG
CAACAGATGCAGACATCTCAAAAAACTCAGCAGCAGACTTCTCCGCAAGCTTCCGCACTGCCTGCCGGAATTCCAGACGG
TACAACGCGGCGCAGAAGGGGGACGGCACGTCCGGGTTCAAAAGCTGCAAAACTGCGTGAAGCGGCGATTAAAACGTTGA
AGCGTCACAATGCGGCAATCAAAAGCTCCGAACTTCAAAAAGAAATTGAAAAAGAAAGCGGGCTTGAAATTCCGAATATG
ACAACCTTCATGCAAAGTCTCATTAAAATGTATCCGGAAGTCAAAAAACCATACCGCGGTCAATATATATTAGAGGGAGA
CATATCTACCGAAACAGAAAAACAATAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

83.158

97.436

0.81

Multiple sequence alignment