Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   MHB78_RS08010 Genome accession   NZ_CP150286
Coordinates   1482541..1483278 (+) Length   245 a.a.
NCBI ID   WP_046132148.1    Uniprot ID   A0AAE2ELI5
Organism   Bacillus sp. FSL K6-0138     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1477541..1488278
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MHB78_RS07995 (MHB78_07995) - 1477724..1477915 (-) 192 WP_082094150.1 hypothetical protein -
  MHB78_RS08000 (MHB78_08000) - 1478376..1481018 (+) 2643 WP_046132060.1 valine--tRNA ligase -
  MHB78_RS08005 (MHB78_08005) - 1481094..1482392 (+) 1299 WP_046132061.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  MHB78_RS08010 (MHB78_08010) comC 1482541..1483278 (+) 738 WP_046132148.1 A24 family peptidase Machinery gene
  MHB78_RS08015 (MHB78_08015) - 1483472..1484494 (+) 1023 WP_046132149.1 SPOR domain-containing protein -
  MHB78_RS08020 (MHB78_08020) - 1484650..1485222 (+) 573 WP_046132062.1 Maf family protein -
  MHB78_RS08025 (MHB78_08025) radC 1485260..1485952 (+) 693 WP_173427510.1 DNA repair protein RadC -
  MHB78_RS08030 (MHB78_08030) - 1486039..1487049 (+) 1011 WP_046132063.1 rod shape-determining protein -
  MHB78_RS08035 (MHB78_08035) mreC 1487081..1487974 (+) 894 WP_046132064.1 rod shape-determining protein MreC -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 26213.79 Da        Isoelectric Point: 8.4843

>NTDB_id=969535 MHB78_RS08010 WP_046132148.1 1482541..1483278(+) (comC) [Bacillus sp. FSL K6-0138]
MYFVITGLVLGSFFNAAGRRIPQKTSLLAPRSACPVCHRPLTFLELIPVLSYILQRGKCRGCKCSISIVYPAVELTAAFL
FPFAWLQMGGEGELVMALLLISLLLIAFVSDVTYMVIPDVVLCVFLPIFVAGRLLIPLDPWHSSITGAACGCLLPLFTAA
VTKGGIGGGDVKLFAVLGVVLGAKLIVLVFFLSAACGTVIGLTAMACGKLKRREPFPFAPAILIGTLTGYFYGDQLIDLY
VQMMA

Nucleotide


Download         Length: 738 bp        

>NTDB_id=969535 MHB78_RS08010 WP_046132148.1 1482541..1483278(+) (comC) [Bacillus sp. FSL K6-0138]
ATGTACTTTGTCATAACCGGTTTGGTGCTAGGCTCTTTTTTTAATGCGGCCGGCCGCCGCATCCCTCAAAAAACCTCATT
GCTCGCTCCGCGTTCCGCCTGCCCCGTCTGCCACCGCCCATTGACTTTTCTTGAGCTGATACCGGTGCTGTCCTACATCT
TGCAGAGAGGAAAGTGCAGAGGGTGCAAATGCTCCATTTCGATCGTCTATCCGGCCGTTGAGCTGACGGCGGCTTTTCTG
TTTCCCTTTGCATGGCTGCAGATGGGCGGAGAGGGAGAGCTTGTCATGGCGCTTTTGCTCATTTCTTTGCTGCTAATCGC
TTTTGTCTCAGATGTGACGTATATGGTCATACCCGATGTCGTACTTTGTGTTTTTCTGCCTATTTTCGTTGCCGGGCGTT
TATTGATTCCGCTTGATCCTTGGCATTCGAGCATAACGGGGGCGGCATGCGGATGCCTGCTGCCGCTCTTTACGGCTGCT
GTGACGAAAGGGGGCATCGGCGGGGGCGATGTGAAGCTGTTTGCCGTCCTTGGCGTCGTCCTGGGAGCCAAGCTGATCGT
GCTCGTGTTTTTCCTGTCCGCCGCCTGCGGAACGGTGATCGGGCTTACAGCCATGGCTTGCGGAAAGCTCAAGCGAAGGG
AGCCCTTTCCGTTTGCGCCGGCCATTTTGATCGGAACGCTGACAGGCTATTTTTACGGCGATCAGCTGATCGATTTGTAC
GTCCAAATGATGGCATAA

Domains

Predicted by InterProScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(5-87)

Type IV leader peptidase family (Peptidase_A24)

(98-202)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

49.372

97.551

0.482

Multiple sequence alignment