Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGG   Type   Machinery gene
Locus tag   ACJVC4_RS09615 Genome accession   NZ_CP177179
Coordinates   2053573..2053890 (-) Length   105 a.a.
NCBI ID   WP_021144683.1    Uniprot ID   -
Organism   Streptococcus salivarius strain MRD-NRLLH     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2048573..2058890
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACJVC4_RS09585 - 2048918..2049580 (-) 663 WP_037598525.1 CPBP family intramembrane glutamic endopeptidase -
  ACJVC4_RS09590 - 2049693..2050136 (-) 444 WP_002892029.1 hypothetical protein -
  ACJVC4_RS09595 - 2050210..2050866 (-) 657 WP_002892031.1 CPBP family intramembrane glutamic endopeptidase -
  ACJVC4_RS09600 - 2050878..2051075 (-) 198 WP_037598528.1 helix-turn-helix transcriptional regulator -
  ACJVC4_RS09605 - 2051322..2052515 (-) 1194 WP_002892033.1 acetate kinase -
  ACJVC4_RS09610 comGH 2052572..2053528 (-) 957 WP_002885753.1 class I SAM-dependent methyltransferase Machinery gene
  ACJVC4_RS09615 comGG 2053573..2053890 (-) 318 WP_021144683.1 competence type IV pilus minor pilin ComGG Machinery gene
  ACJVC4_RS09620 comGF 2053868..2054305 (-) 438 WP_002887014.1 competence type IV pilus minor pilin ComGF Machinery gene
  ACJVC4_RS09625 comGE 2054292..2054522 (-) 231 WP_014635119.1 competence type IV pilus minor pilin ComGE Machinery gene
  ACJVC4_RS09630 comGD 2054554..2054982 (-) 429 WP_260312930.1 competence type IV pilus minor pilin ComGD Machinery gene
  ACJVC4_RS09635 comGC 2054942..2055256 (-) 315 WP_037611125.1 competence type IV pilus major pilin ComGC Machinery gene
  ACJVC4_RS09640 comGB 2055265..2056365 (-) 1101 WP_155115607.1 competence type IV pilus assembly protein ComGB Machinery gene
  ACJVC4_RS09645 comGA 2056247..2057188 (-) 942 WP_002885658.1 competence type IV pilus ATPase ComGA Machinery gene
  ACJVC4_RS09650 - 2057268..2057630 (-) 363 WP_002885749.1 DUF1033 family protein -

Sequence

Protein


Download         Length: 105 a.a.        Molecular weight: 11926.01 Da        Isoelectric Point: 10.5034

>NTDB_id=969520 ACJVC4_RS09615 WP_021144683.1 2053573..2053890(-) (comGG) [Streptococcus salivarius strain MRD-NRLLH]
MLLKKQVRGGVLLYALFMAGIFTLLLHVYLERVVASSRQNQAQMISSQSRLMAEMTMDLADKEAGAFSFSQGTTTYEVKD
KQVIVRVASKGQIKTYRYVKKQEQK

Nucleotide


Download         Length: 318 bp        

>NTDB_id=969520 ACJVC4_RS09615 WP_021144683.1 2053573..2053890(-) (comGG) [Streptococcus salivarius strain MRD-NRLLH]
ATGCTTTTGAAAAAACAGGTTAGGGGAGGCGTTCTTCTCTACGCTCTTTTTATGGCTGGCATTTTCACACTCCTTCTTCA
TGTTTATCTGGAGCGGGTGGTTGCTAGCTCTAGACAGAACCAAGCGCAAATGATCTCCAGTCAGAGTCGTCTCATGGCAG
AGATGACCATGGACTTGGCGGACAAGGAAGCAGGTGCTTTTAGTTTCTCTCAGGGAACTACGACTTATGAGGTTAAGGAC
AAACAAGTGATTGTTAGAGTTGCCAGTAAAGGTCAAATCAAGACCTATCGTTATGTGAAGAAGCAGGAGCAGAAATAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGG Streptococcus mutans UA140

43.396

100

0.438
  comGG Streptococcus mutans UA159

43.396

100

0.438

Multiple sequence alignment