Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   MHB37_RS24115 Genome accession   NZ_CP150285
Coordinates   5377981..5378418 (+) Length   145 a.a.
NCBI ID   WP_405168620.1    Uniprot ID   -
Organism   Paenibacillus sp. FSL H3-0286     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 5372981..5383418
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MHB37_RS24080 (MHB37_24000) - 5373060..5373746 (-) 687 WP_036683338.1 M15 family metallopeptidase -
  MHB37_RS24085 (MHB37_24005) - 5373864..5374028 (+) 165 WP_169744799.1 hypothetical protein -
  MHB37_RS24090 (MHB37_24010) - 5374025..5374360 (-) 336 WP_076128863.1 YolD-like family protein -
  MHB37_RS24095 (MHB37_24015) - 5374575..5375135 (-) 561 WP_076128860.1 hypothetical protein -
  MHB37_RS24100 (MHB37_24020) - 5375253..5375741 (+) 489 WP_076128858.1 PH domain-containing protein -
  MHB37_RS24105 (MHB37_24025) - 5375814..5377289 (-) 1476 WP_076279279.1 glycosyl hydrolase -
  MHB37_RS24110 (MHB37_24030) - 5377464..5377880 (-) 417 WP_076103796.1 cytidine deaminase -
  MHB37_RS24115 (MHB37_24035) nucA/comI 5377981..5378418 (+) 438 WP_405168620.1 DNA-entry nuclease Machinery gene
  MHB37_RS24120 (MHB37_24040) - 5378500..5378649 (-) 150 WP_155288175.1 hypothetical protein -
  MHB37_RS24125 (MHB37_24045) - 5378799..5378975 (+) 177 WP_076098563.1 YjfB family protein -
  MHB37_RS24130 (MHB37_24050) - 5379140..5379691 (+) 552 WP_036683410.1 ImmA/IrrE family metallo-endopeptidase -
  MHB37_RS24135 (MHB37_24055) - 5379758..5379919 (+) 162 WP_155288176.1 hypothetical protein -
  MHB37_RS24140 (MHB37_24060) - 5380284..5380619 (+) 336 WP_076302540.1 DUF3139 domain-containing protein -
  MHB37_RS24145 (MHB37_24065) - 5380735..5380854 (+) 120 Protein_4765 phosphomethylpyrimidine synthase ThiC -
  MHB37_RS24150 (MHB37_24070) - 5381185..5381679 (+) 495 WP_076220021.1 RNA polymerase sigma factor -
  MHB37_RS24155 (MHB37_24075) - 5381676..5382665 (+) 990 WP_405168621.1 hypothetical protein -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16154.04 Da        Isoelectric Point: 4.5847

>NTDB_id=969505 MHB37_RS24115 WP_405168620.1 5377981..5378418(+) (nucA/comI) [Paenibacillus sp. FSL H3-0286]
MKVRKWISSLIIVALLALASYWFEQNGEPTDPSSPSDSSVVQLTFPSDRYPETAKHIQDAIAKGESATCTINREQAEENR
KESLKGIPTKKGYDRDEWPMAMCKEGGVGADIEYITPSDNRGAGSWVGNQLEDYADGTRVEFMFK

Nucleotide


Download         Length: 438 bp        

>NTDB_id=969505 MHB37_RS24115 WP_405168620.1 5377981..5378418(+) (nucA/comI) [Paenibacillus sp. FSL H3-0286]
TTGAAAGTAAGAAAATGGATCTCCAGTCTCATCATTGTTGCATTACTTGCTTTGGCTAGTTACTGGTTTGAACAAAACGG
AGAGCCTACAGACCCCTCGTCTCCATCCGATTCGAGTGTTGTTCAGCTAACCTTCCCATCAGACCGCTATCCTGAGACCG
CCAAACATATTCAGGATGCCATTGCGAAAGGTGAATCCGCCACATGTACGATTAACCGAGAGCAGGCTGAAGAGAACCGT
AAAGAGTCCTTAAAAGGGATTCCCACTAAAAAGGGGTATGACCGGGATGAATGGCCAATGGCTATGTGTAAGGAAGGCGG
CGTTGGTGCCGACATTGAATACATAACGCCAAGCGATAACCGCGGGGCTGGAAGCTGGGTTGGCAATCAGCTGGAGGATT
ATGCAGACGGAACCCGGGTAGAATTTATGTTTAAATAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(48-141)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

69.903

71.034

0.497

Multiple sequence alignment