Detailed information    

insolico Bioinformatically predicted

Overview


Name   ceuB   Type   Machinery gene
Locus tag   MHB37_RS06160 Genome accession   NZ_CP150285
Coordinates   1401974..1402921 (+) Length   315 a.a.
NCBI ID   WP_405169044.1    Uniprot ID   -
Organism   Paenibacillus sp. FSL H3-0286     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 1396974..1407921
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MHB37_RS06130 (MHB37_06115) - 1397290..1398255 (+) 966 WP_076142180.1 nitronate monooxygenase family protein -
  MHB37_RS06135 (MHB37_06120) - 1398340..1399434 (-) 1095 WP_076128106.1 Xaa-Pro peptidase family protein -
  MHB37_RS06140 (MHB37_06125) - 1399660..1400502 (+) 843 WP_076142168.1 SDR family oxidoreductase -
  MHB37_RS06145 (MHB37_06130) - 1400528..1401031 (+) 504 WP_076185721.1 GNAT family N-acetyltransferase -
  MHB37_RS06150 (MHB37_06135) - 1401049..1401393 (-) 345 WP_076128100.1 helix-turn-helix domain-containing protein -
  MHB37_RS06155 (MHB37_06140) - 1401485..1401745 (+) 261 WP_036681837.1 YqkE family protein -
  MHB37_RS06160 (MHB37_06145) ceuB 1401974..1402921 (+) 948 WP_405169044.1 ABC transporter permease Machinery gene
  MHB37_RS06165 (MHB37_06150) - 1402924..1403868 (+) 945 WP_036681842.1 iron chelate uptake ABC transporter family permease subunit -
  MHB37_RS06170 (MHB37_06155) - 1403862..1404617 (+) 756 WP_036681845.1 ABC transporter ATP-binding protein -
  MHB37_RS06175 (MHB37_06160) - 1404740..1405744 (+) 1005 WP_282579687.1 siderophore ABC transporter substrate-binding protein -
  MHB37_RS06180 (MHB37_06165) - 1405912..1406415 (+) 504 WP_036681849.1 sigma-70 family RNA polymerase sigma factor -
  MHB37_RS06185 (MHB37_06170) - 1406408..1407601 (+) 1194 WP_405169045.1 anti-sigma factor -

Sequence


Protein


Download         Length: 315 a.a.        Molecular weight: 34536.72 Da        Isoelectric Point: 10.0525

>NTDB_id=969492 MHB37_RS06160 WP_405169044.1 1401974..1402921(+) (ceuB) [Paenibacillus sp. FSL H3-0286]
MKLKYLSLLLIVFSFISLFIGVKDISPLDLFHLTESQAQTLLVSRIPRLAALIIAGVSMSIAGLIMQQLSRNKFVSPTTA
GTMDSAKFGILVSLMLFTGATPMQKLLVAFVFALLGTFIFMRILDRIKFKDSIFIPLVGLMFGNIVSSITTFFAYKNDLI
QNISSWMLGDFSTIIKGQYELIYISIPLVILAYLFANKFTVAGMGEDFSVNLGMNYKAVVNVGLVIVALISSVVILTVGT
IPFLGLVVPNIVTLYIGDNLKKSLAHTAILGAVFLLFCDILGRLIIYPYEISISLTVGVIGSGLFIYLLMRRKAN

Nucleotide


Download         Length: 948 bp        

>NTDB_id=969492 MHB37_RS06160 WP_405169044.1 1401974..1402921(+) (ceuB) [Paenibacillus sp. FSL H3-0286]
ATGAAACTAAAATATTTGTCCCTACTTCTAATAGTATTTTCATTTATATCTTTGTTTATAGGCGTTAAAGATATATCCCC
ATTAGATCTCTTTCATCTTACGGAATCTCAAGCACAGACCTTGCTAGTAAGCCGGATTCCCCGGTTAGCCGCATTGATTA
TCGCTGGAGTCAGCATGAGTATTGCCGGATTAATTATGCAACAGCTGTCACGCAATAAATTCGTCTCCCCGACTACGGCA
GGGACGATGGATTCCGCGAAATTTGGTATTCTCGTATCCCTCATGTTATTCACAGGCGCAACGCCAATGCAGAAATTGCT
GGTTGCTTTTGTTTTTGCACTATTGGGCACCTTTATTTTTATGAGAATCTTGGATCGGATCAAGTTCAAGGATAGTATTT
TTATCCCGCTGGTCGGACTCATGTTCGGCAACATTGTAAGCTCGATTACAACATTTTTTGCGTATAAAAATGATTTGATT
CAGAATATCTCGTCTTGGATGCTTGGAGATTTCTCAACGATTATCAAAGGCCAATACGAATTAATTTATATCAGCATTCC
ACTTGTCATTCTGGCGTATCTCTTCGCTAATAAATTTACGGTAGCCGGTATGGGCGAGGATTTCTCCGTTAATCTTGGCA
TGAATTACAAAGCGGTTGTCAACGTGGGATTGGTAATTGTAGCGTTAATCTCTTCTGTTGTCATTTTAACCGTAGGTACG
ATTCCATTTCTGGGTCTGGTAGTACCTAACATTGTAACGTTGTACATAGGAGATAACCTCAAAAAAAGTCTGGCGCATAC
AGCCATTCTCGGAGCGGTGTTCCTCCTGTTCTGCGATATTCTGGGCAGGCTCATTATCTATCCATATGAAATATCAATCA
GTCTCACGGTAGGCGTCATCGGTAGTGGTCTGTTTATCTACTTGCTGATGAGAAGAAAGGCGAACTAG

Domains


Predicted by InterproScan.

(9-311)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

56.369

99.683

0.562


Multiple sequence alignment