Detailed information
Bioinformatically predicted
Overview
| Name | opaR | Type | Regulator |
| Locus tag | OO966_RS02000 | Genome accession | NZ_AP026780 |
| Coordinates | 419624..420220 (-) | Length | 198 a.a. |
| NCBI ID | WP_005297642.1 | Uniprot ID | A0A2T3QMJ2 |
| Organism | Photobacterium damselae subsp. damselae strain 04Ya311 | ||
| Function | regulation of Dns (predicted from homology) Competence regulation |
||
Genomic Context
Location: 414624..425220
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| OO966_RS01985 (PDY_03740) | - | 415716..416729 (+) | 1014 | WP_005297636.1 | Fe(3+) ABC transporter substrate-binding protein | - |
| OO966_RS01990 (PDY_03750) | - | 416885..418510 (+) | 1626 | WP_264954821.1 | ABC transporter permease | - |
| OO966_RS01995 (PDY_03760) | - | 418513..419550 (+) | 1038 | WP_264955440.1 | ABC transporter ATP-binding protein | - |
| OO966_RS02000 (PDY_03770) | opaR | 419624..420220 (-) | 597 | WP_005297642.1 | TetR/AcrR family transcriptional regulator | Regulator |
| OO966_RS02005 (PDY_03780) | hpt | 420441..420977 (+) | 537 | WP_005297644.1 | hypoxanthine phosphoribosyltransferase | - |
| OO966_RS02010 (PDY_03790) | can | 421052..421723 (-) | 672 | WP_005297646.1 | carbonate dehydratase | - |
| OO966_RS02015 (PDY_03800) | - | 421822..422745 (+) | 924 | WP_005297648.1 | ABC transporter ATP-binding protein | - |
| OO966_RS02020 (PDY_03810) | - | 422742..423512 (+) | 771 | WP_065171758.1 | ABC transporter permease | - |
| OO966_RS02025 (PDY_03820) | panC | 423630..424520 (-) | 891 | WP_005297652.1 | pantoate--beta-alanine ligase | - |
Sequence
Protein
Download Length: 198 a.a. Molecular weight: 22812.08 Da Isoelectric Point: 7.1177
>NTDB_id=96944 OO966_RS02000 WP_005297642.1 419624..420220(-) (opaR) [Photobacterium damselae subsp. damselae strain 04Ya311]
MDMVIKRTRTRLSPEKRREQLLNSALDVFARRGIGRGGHADIAEMANVSVATVFNYFPTREDLVEQVLIHVESRFNKLLT
HSLNDEMPTAKAKLTNLTDCLIKAVIEQHDWLKVWFEWSTSVRDDIWPLFIKTNKNNLQKLTSVFEQGLTAGEFSRSQSA
SDLAHMFHGTCYVLYLQTHLTLDPEIMQRQADSYLQSL
MDMVIKRTRTRLSPEKRREQLLNSALDVFARRGIGRGGHADIAEMANVSVATVFNYFPTREDLVEQVLIHVESRFNKLLT
HSLNDEMPTAKAKLTNLTDCLIKAVIEQHDWLKVWFEWSTSVRDDIWPLFIKTNKNNLQKLTSVFEQGLTAGEFSRSQSA
SDLAHMFHGTCYVLYLQTHLTLDPEIMQRQADSYLQSL
Nucleotide
Download Length: 597 bp
>NTDB_id=96944 OO966_RS02000 WP_005297642.1 419624..420220(-) (opaR) [Photobacterium damselae subsp. damselae strain 04Ya311]
ATGGACATGGTGATTAAGCGTACTCGTACTCGCTTATCTCCAGAAAAACGTCGAGAGCAGCTACTCAATAGCGCACTGGA
TGTTTTTGCTCGTCGTGGTATTGGCCGAGGGGGCCACGCAGATATCGCGGAAATGGCAAATGTCTCTGTTGCGACCGTTT
TCAATTATTTTCCAACTCGCGAAGATTTAGTAGAACAGGTATTAATTCACGTTGAATCTCGTTTCAATAAACTACTGACA
CACTCTCTCAACGATGAAATGCCAACAGCAAAAGCCAAACTAACTAACCTTACCGATTGCTTAATTAAAGCTGTTATAGA
GCAGCACGATTGGCTAAAAGTCTGGTTTGAATGGAGTACCTCAGTACGTGATGACATTTGGCCGCTGTTTATTAAAACCA
ATAAAAATAACTTACAAAAGTTAACTTCGGTTTTTGAACAGGGATTAACGGCTGGAGAATTTAGCCGCTCTCAATCTGCA
TCAGATTTAGCGCATATGTTTCACGGTACCTGTTATGTGCTGTACTTACAAACGCACCTAACCTTAGACCCTGAAATTAT
GCAGCGACAAGCTGATAGCTATTTACAGAGCCTGTAA
ATGGACATGGTGATTAAGCGTACTCGTACTCGCTTATCTCCAGAAAAACGTCGAGAGCAGCTACTCAATAGCGCACTGGA
TGTTTTTGCTCGTCGTGGTATTGGCCGAGGGGGCCACGCAGATATCGCGGAAATGGCAAATGTCTCTGTTGCGACCGTTT
TCAATTATTTTCCAACTCGCGAAGATTTAGTAGAACAGGTATTAATTCACGTTGAATCTCGTTTCAATAAACTACTGACA
CACTCTCTCAACGATGAAATGCCAACAGCAAAAGCCAAACTAACTAACCTTACCGATTGCTTAATTAAAGCTGTTATAGA
GCAGCACGATTGGCTAAAAGTCTGGTTTGAATGGAGTACCTCAGTACGTGATGACATTTGGCCGCTGTTTATTAAAACCA
ATAAAAATAACTTACAAAAGTTAACTTCGGTTTTTGAACAGGGATTAACGGCTGGAGAATTTAGCCGCTCTCAATCTGCA
TCAGATTTAGCGCATATGTTTCACGGTACCTGTTATGTGCTGTACTTACAAACGCACCTAACCTTAGACCCTGAAATTAT
GCAGCGACAAGCTGATAGCTATTTACAGAGCCTGTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| opaR | Vibrio parahaemolyticus RIMD 2210633 |
48.485 |
100 |
0.485 |
| hapR | Vibrio cholerae C6706 |
48.241 |
100 |
0.485 |
| hapR | Vibrio cholerae strain A1552 |
48.241 |
100 |
0.485 |