Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   MHB50_RS11545 Genome accession   NZ_CP150282
Coordinates   2417947..2419767 (-) Length   606 a.a.
NCBI ID   WP_077112399.1    Uniprot ID   -
Organism   Siminovitchia sp. FSL H7-0308     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 2412947..2424767
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MHB50_RS11520 (MHB50_11520) - 2412951..2413592 (-) 642 WP_077110293.1 GTP pyrophosphokinase family protein -
  MHB50_RS11525 (MHB50_11525) - 2413728..2414321 (+) 594 WP_077110294.1 CYTH domain-containing protein -
  MHB50_RS11530 (MHB50_11530) - 2414328..2414963 (+) 636 WP_236017173.1 lytic transglycosylase domain-containing protein -
  MHB50_RS11535 (MHB50_11535) - 2415092..2415493 (+) 402 WP_077110295.1 globin -
  MHB50_RS11540 (MHB50_11540) - 2415493..2416323 (+) 831 WP_077110296.1 ClpXP adapter SpxH family protein -
  MHB50_RS11545 (MHB50_11545) pepF 2417947..2419767 (-) 1821 WP_077112399.1 oligoendopeptidase F Regulator
  MHB50_RS11550 (MHB50_11550) - 2419834..2421180 (-) 1347 WP_077112397.1 competence protein CoiA family protein -
  MHB50_RS11555 (MHB50_11555) mecA 2421485..2422144 (-) 660 WP_340085334.1 adaptor protein MecA -
  MHB50_RS11560 (MHB50_11560) spxA 2422852..2423247 (-) 396 WP_077112395.1 transcriptional regulator SpxA -
  MHB50_RS11565 (MHB50_11565) - 2423560..2424762 (-) 1203 WP_236017177.1 putative glycoside hydrolase -

Sequence

Protein


Download         Length: 606 a.a.        Molecular weight: 69805.50 Da        Isoelectric Point: 5.1185

>NTDB_id=969408 MHB50_RS11545 WP_077112399.1 2417947..2419767(-) (pepF) [Siminovitchia sp. FSL H7-0308]
MTEENNVKTLPSRSEVSEELTWRLEDIFVTDEEWEKEYAAIQQKMKEAQQFKGKLGESAATLYEALQFQSKLSERMGKLY
TYAHMRNDQDTTNTHYQGMNARAESLYSQLTSAFSYIVPEILNIEKEQLAQILKEEPALQLYEHALNRINLKRGHVLDAE
QEALLAEASEVMGASSTTFSVLNNADLEFPVIKDEEGNDVQLSHGNYIRFLESRDRSVRKEAFMNVYRTYGKFKNTFAST
LSGSIKQDNFYAKARNYQTARQAALAANNIPEKVYDNLVSTINNNLHLLQRYLKLRKQILGLEQLHMYDLYVPLVKEVDM
KVTYEEAKDILLSGLIPLGKEYVGILQAGFENRWVDVVENKGKRSGAYSSGAYGTNPYILMNWQDNVNNLFTLAHEFGHS
VHSYYTRKNQPYPYGNYSIFVAEVASTCNEALLGDYMQKATDDKQERLYLINHYLEGFRGTVFRQTMFAEFEHLIHQKAQ
EGTALTADFLTKQYYELNKKYFGEDHIHIDEQIGLEWSRIPHFYYNYYVYQYATGFSAATALSKQILEEGETAVGRYINF
LKAGNSDYPIEVLKQAGVDMTTTEPIEAACKVFEEKLNEMEQLLMS

Nucleotide


Download         Length: 1821 bp        

>NTDB_id=969408 MHB50_RS11545 WP_077112399.1 2417947..2419767(-) (pepF) [Siminovitchia sp. FSL H7-0308]
ATGACAGAGGAGAATAACGTAAAAACTCTTCCAAGCCGATCGGAAGTGTCGGAAGAATTAACATGGAGATTAGAGGATAT
ATTTGTGACGGATGAGGAGTGGGAAAAAGAGTATGCTGCCATCCAGCAAAAGATGAAAGAAGCGCAACAGTTTAAAGGGA
AATTGGGCGAAAGTGCGGCAACATTGTATGAAGCGTTGCAATTTCAATCAAAACTGTCGGAACGGATGGGTAAACTTTAT
ACATATGCTCATATGCGCAACGATCAGGATACGACGAATACACATTATCAAGGGATGAATGCCCGGGCGGAAAGTTTGTA
TTCACAATTAACCAGCGCTTTTTCATATATCGTTCCGGAAATACTCAATATCGAAAAGGAACAGCTTGCGCAAATTTTAA
AAGAAGAACCGGCATTACAATTGTATGAGCATGCGCTAAACCGTATTAACCTGAAGCGCGGGCACGTGTTGGACGCAGAG
CAGGAGGCGCTTCTTGCCGAAGCCTCGGAAGTAATGGGGGCATCAAGCACCACATTCAGCGTGTTAAACAACGCAGACCT
TGAATTCCCGGTCATAAAGGACGAAGAAGGAAATGATGTGCAGCTTTCGCATGGAAATTACATTCGTTTTCTGGAGAGTC
GGGATCGCTCCGTCAGAAAAGAAGCATTTATGAACGTGTACCGCACGTACGGAAAATTTAAGAATACATTTGCCAGTACT
TTAAGCGGTTCTATCAAGCAGGATAACTTTTATGCCAAAGCGAGAAATTATCAAACGGCAAGGCAGGCAGCTTTGGCAGC
CAACAACATTCCTGAAAAAGTATATGACAATCTTGTATCAACGATCAATAACAATCTGCACCTGTTGCAGCGCTATTTGA
AGCTCCGCAAACAGATTTTGGGACTTGAACAGTTGCATATGTATGATTTATACGTACCGCTTGTAAAAGAAGTCGACATG
AAAGTGACATACGAGGAAGCGAAAGACATTCTCCTTTCCGGCCTTATTCCTCTAGGAAAAGAGTATGTCGGGATCTTGCA
AGCAGGATTTGAAAACCGCTGGGTGGATGTTGTGGAAAATAAGGGGAAACGAAGCGGTGCCTATTCTTCGGGCGCATATG
GCACGAATCCTTATATCCTCATGAATTGGCAGGATAACGTCAACAACTTATTTACATTGGCACATGAATTCGGACACAGT
GTGCACAGCTACTATACAAGAAAAAACCAGCCATATCCGTACGGCAATTACTCCATATTTGTCGCGGAAGTGGCTTCCAC
ATGCAATGAAGCACTACTTGGAGATTATATGCAAAAAGCGACTGATGATAAACAGGAGCGTCTATATTTGATTAACCATT
ACTTGGAAGGCTTTCGTGGAACCGTTTTTCGCCAGACGATGTTTGCGGAATTTGAGCATTTAATCCACCAAAAAGCTCAA
GAAGGGACTGCCTTAACCGCAGACTTCCTTACAAAACAATACTATGAATTAAACAAAAAATATTTTGGCGAGGACCATAT
CCATATTGACGAACAAATCGGGCTTGAATGGTCGAGAATCCCCCATTTTTACTATAATTATTACGTTTATCAATATGCTA
CAGGATTCAGCGCCGCAACTGCCTTAAGCAAACAAATATTGGAAGAAGGTGAAACAGCTGTCGGGCGATATATCAACTTT
TTAAAAGCGGGCAACTCTGATTATCCGATCGAAGTGCTCAAACAGGCAGGGGTTGACATGACAACAACAGAGCCGATCGA
AGCGGCATGTAAAGTGTTTGAAGAAAAACTGAATGAAATGGAACAACTGTTAATGTCCTAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(211-590)

Oligopeptidase F (Peptidase_M3_N)

(120-189)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

50

98.35

0.492

Multiple sequence alignment