Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   MHB50_RS09500 Genome accession   NZ_CP150282
Coordinates   1995028..1995978 (-) Length   316 a.a.
NCBI ID   WP_340085197.1    Uniprot ID   -
Organism   Siminovitchia sp. FSL H7-0308     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1990028..2000978
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MHB50_RS09475 (MHB50_09475) - 1991531..1991758 (-) 228 WP_340085195.1 hypothetical protein -
  MHB50_RS09480 (MHB50_09480) - 1992098..1992283 (-) 186 WP_077110326.1 H-type small acid-soluble spore protein -
  MHB50_RS09485 (MHB50_09485) - 1992348..1993307 (-) 960 WP_340085196.1 siderophore ABC transporter substrate-binding protein -
  MHB50_RS09490 (MHB50_09490) - 1993327..1994085 (-) 759 WP_077110324.1 ATP-binding cassette domain-containing protein -
  MHB50_RS09495 (MHB50_09495) - 1994082..1995035 (-) 954 WP_077110323.1 iron chelate uptake ABC transporter family permease subunit -
  MHB50_RS09500 (MHB50_09500) ceuB 1995028..1995978 (-) 951 WP_340085197.1 ABC transporter permease Machinery gene
  MHB50_RS09505 (MHB50_09505) - 1996280..1996990 (-) 711 WP_340085198.1 EcsC family protein -
  MHB50_RS09510 (MHB50_09510) - 1997438..1997629 (-) 192 WP_077110320.1 hypothetical protein -
  MHB50_RS09515 (MHB50_09515) - 1997646..2000777 (-) 3132 WP_340085199.1 AAA family ATPase -

Sequence

Protein


Download         Length: 316 a.a.        Molecular weight: 34891.15 Da        Isoelectric Point: 9.4173

>NTDB_id=969402 MHB50_RS09500 WP_340085197.1 1995028..1995978(-) (ceuB) [Siminovitchia sp. FSL H7-0308]
MRITYFVFVLLFLCTLSLFIGVSDITPLDLLDFSSEETEVFLVSRLPRLISIILAGAGMSICGLIMQQLSRNKFVSPTTA
GTLDATRLGILVSMLLFSNAAMLVKMSVAFAFALAGSFLFMNILNRIKFKDAIFIPLVGLMFGNILSSITTFFAYKADVI
QNMSAWLQGDFSMIMKGRYELLYISIPIILLAYFFAHRFTVAGMGEDFAKNLGLSYKQTVNIGLILVSLVTATVVLTVGM
IPFLGLIIPNIISIFMGDHMKKTLPYTALLGAIFLLACDVLGRVLIYPYEISISLMVGIIGSGIFLYLLFRRKAYA

Nucleotide


Download         Length: 951 bp        

>NTDB_id=969402 MHB50_RS09500 WP_340085197.1 1995028..1995978(-) (ceuB) [Siminovitchia sp. FSL H7-0308]
GTGAGAATAACATATTTTGTTTTTGTCCTTCTTTTTTTATGTACTCTTTCTTTGTTTATAGGAGTCAGCGATATTACTCC
TTTAGATTTACTCGATTTTTCATCAGAAGAAACAGAAGTATTTCTGGTCAGCCGGCTTCCGCGGCTTATATCCATCATTT
TAGCAGGAGCGGGTATGAGCATTTGTGGGCTGATCATGCAGCAATTAAGCCGAAACAAATTTGTTTCGCCTACAACAGCC
GGAACTTTGGATGCAACAAGACTGGGGATCCTTGTCTCCATGCTTTTGTTCTCCAACGCTGCAATGCTCGTAAAAATGTC
AGTGGCATTTGCATTTGCGCTTGCGGGTTCGTTTTTGTTTATGAATATCCTCAATCGCATTAAATTTAAAGACGCTATTT
TTATTCCGCTCGTCGGACTCATGTTTGGAAATATATTATCGTCCATAACAACGTTTTTTGCCTATAAGGCCGATGTGATC
CAAAACATGTCAGCATGGCTGCAGGGTGACTTTTCAATGATCATGAAAGGCCGATATGAGCTGCTGTACATAAGCATACC
CATTATATTGTTAGCTTACTTCTTCGCCCATCGATTCACGGTTGCCGGAATGGGAGAAGATTTTGCGAAAAATCTTGGAC
TTTCCTATAAGCAAACCGTCAATATCGGCTTGATACTCGTTTCACTTGTAACGGCAACAGTCGTATTAACGGTAGGGATG
ATTCCTTTTTTAGGTTTGATTATACCAAACATCATATCTATCTTTATGGGCGACCATATGAAAAAAACCTTGCCTTACAC
GGCATTGCTCGGAGCCATATTTCTTTTGGCATGTGATGTTTTGGGCCGCGTTTTAATTTACCCATATGAAATTTCCATTA
GTTTAATGGTGGGCATTATAGGCAGCGGTATTTTCTTATATTTGCTTTTTCGGAGGAAGGCATATGCGTAG

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

53.896

97.468

0.525

Multiple sequence alignment