Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   MHB50_RS06745 Genome accession   NZ_CP150282
Coordinates   1442564..1444960 (+) Length   798 a.a.
NCBI ID   WP_077110562.1    Uniprot ID   -
Organism   Siminovitchia sp. FSL H7-0308     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1437564..1449960
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MHB50_RS06720 (MHB50_06720) - 1438413..1439081 (+) 669 WP_077110552.1 hypothetical protein -
  MHB50_RS06725 (MHB50_06725) - 1439078..1439497 (+) 420 WP_077110554.1 Rrf2 family transcriptional regulator -
  MHB50_RS06730 (MHB50_06730) - 1439519..1440667 (+) 1149 WP_077110556.1 cysteine desulfurase family protein -
  MHB50_RS06735 (MHB50_06735) mnmA 1440682..1441797 (+) 1116 WP_077110558.1 tRNA 2-thiouridine(34) synthase MnmA -
  MHB50_RS06740 (MHB50_06740) - 1441872..1442534 (+) 663 WP_077110560.1 tetratricopeptide repeat protein -
  MHB50_RS06745 (MHB50_06745) recD2 1442564..1444960 (+) 2397 WP_077110562.1 ATP-dependent RecD-like DNA helicase Machinery gene
  MHB50_RS06750 (MHB50_06750) - 1445000..1445530 (+) 531 WP_077110564.1 PRC-barrel domain-containing protein -
  MHB50_RS06755 (MHB50_06755) - 1445490..1445678 (+) 189 WP_077110566.1 hypothetical protein -
  MHB50_RS06760 (MHB50_06760) - 1446135..1447205 (+) 1071 WP_077110568.1 AI-2E family transporter -

Sequence

Protein


Download         Length: 798 a.a.        Molecular weight: 89967.05 Da        Isoelectric Point: 4.8915

>NTDB_id=969394 MHB50_RS06745 WP_077110562.1 1442564..1444960(+) (recD2) [Siminovitchia sp. FSL H7-0308]
MNQQNSLDLRTDEEHFIKGRHLVTIFHNEANFYSVIRIRVEETNVAYEEKEAVVTGYFPKIHEQETYLFYGNLKEHPKFG
LQFHAKHFKKEIPQTKQGLVAYLSSDLFKGIGKKTAERIVETLGENAISRILAEPSVLETIPRLASDTAKDLYDALLEHQ
ELEQIMIGLNQHGFGPQLSMKIYQAYKENALDIIETNPYQLIADVEGIGFGRADELGMQIGIDGVHPDRIKAACLYALEQ
DCLQNGHVYLEAEELLIKVKKLLEDSQPVEIPYDMISQCFIQLEEEGKIIGEEKRVYIPSLYFSERGIITNIERLLEQNQ
YAEQFPESEFLMALGKLEDRLGIQYAPSQKEAIQTALTSPLMILTGGPGTGKTTVIKGIVELYAELHGCSLDIHAYKDQP
FPFVLAAPTGRAAKRMAESTGLPAVTIHRLLGMTGQENMDADGDREIEGKIVIIDEMSMVDTWLAHQLFKALPEDIQVIL
VGDEDQLPSVGPGQVLTDLLKSNIIPTVELTDIYRQADGSSIIELAHTIKKGNIPEKITEPQADRSFIKCQGTQISEVVE
KVVRSAVRKGYAAKDIQVLAPMYRGPAGIDHLNKILQNVLNPKGSGNKRKEVTFGDVSYRIGDKVLQLVNQPEKNVFNGD
IGEIISILYARENVEKQDMMIVSFEGTEVTYYRQDFNQITHAFCCSIHKSQGSEFPIVILPVVKSYYRMLRRNLLYTAIT
RSKEFLILCGEEEAFRMGISRVDDQKRQTTLYEKLAASASLPVDKDKTIEQADLSFEEKLFMVDPMIGMENVTPYDFL

Nucleotide


Download         Length: 2397 bp        

>NTDB_id=969394 MHB50_RS06745 WP_077110562.1 1442564..1444960(+) (recD2) [Siminovitchia sp. FSL H7-0308]
ATGAACCAACAGAATTCTCTCGATTTAAGGACGGATGAAGAACATTTTATAAAGGGGCGCCATTTAGTCACTATTTTCCA
TAATGAGGCGAACTTTTATTCCGTTATCAGAATTCGGGTGGAAGAAACAAACGTCGCATATGAAGAAAAAGAAGCCGTTG
TGACGGGTTATTTCCCTAAAATTCATGAACAGGAGACATATCTTTTTTACGGTAACCTAAAAGAACACCCTAAATTTGGT
CTTCAGTTTCATGCAAAGCATTTTAAAAAGGAAATTCCGCAAACAAAGCAAGGACTTGTTGCCTATCTTTCAAGCGACCT
TTTTAAAGGGATCGGTAAAAAAACGGCCGAACGTATCGTTGAAACACTTGGCGAAAACGCAATTAGCCGCATTTTGGCAG
AACCGTCCGTACTGGAAACCATCCCGAGATTGGCTTCTGATACGGCTAAAGATTTGTACGACGCTCTCCTGGAACATCAA
GAATTGGAACAAATTATGATCGGGCTCAATCAACATGGTTTTGGACCACAGTTGTCCATGAAAATTTACCAAGCATATAA
AGAAAATGCACTGGACATTATTGAGACAAATCCGTATCAATTGATTGCAGATGTGGAGGGGATCGGGTTTGGCCGGGCGG
ATGAACTCGGGATGCAAATAGGCATTGATGGAGTCCACCCCGACCGGATTAAGGCCGCGTGTCTTTATGCGTTAGAGCAA
GATTGTCTGCAAAACGGCCATGTTTATTTAGAGGCGGAAGAGCTTCTGATAAAGGTTAAGAAGCTATTGGAAGACAGCCA
ACCCGTGGAAATTCCATATGACATGATTAGCCAGTGCTTCATACAGCTTGAAGAAGAAGGGAAAATCATTGGTGAAGAAA
AGCGGGTATATATTCCTTCCCTTTATTTTTCCGAAAGAGGGATCATAACAAATATCGAACGCTTGCTTGAGCAAAATCAG
TATGCGGAACAATTTCCGGAGTCGGAATTTTTAATGGCGTTGGGCAAGTTGGAGGACAGACTGGGCATCCAGTATGCGCC
ATCTCAAAAAGAGGCTATTCAAACGGCGCTGACAAGTCCGCTTATGATATTAACCGGGGGACCTGGTACGGGAAAAACAA
CGGTCATAAAAGGGATTGTGGAATTATATGCCGAGCTTCATGGGTGTTCGCTTGATATACACGCTTATAAAGACCAACCC
TTTCCGTTCGTATTAGCCGCCCCGACAGGACGAGCCGCCAAAAGAATGGCAGAATCAACCGGGCTTCCTGCCGTAACAAT
TCACCGTCTTCTCGGTATGACTGGGCAGGAAAATATGGATGCTGACGGGGATCGGGAAATAGAAGGAAAAATCGTCATCA
TTGATGAAATGTCCATGGTCGACACGTGGCTTGCCCATCAACTTTTTAAAGCACTTCCGGAAGATATTCAAGTCATCCTT
GTGGGAGATGAGGATCAGCTTCCGTCCGTCGGGCCGGGACAAGTTCTTACGGACTTATTGAAGTCTAACATCATTCCGAC
AGTGGAGCTTACTGACATTTATCGGCAAGCCGACGGCTCCTCGATTATTGAACTGGCCCATACGATCAAAAAGGGAAACA
TTCCGGAGAAGATCACTGAACCGCAGGCAGACCGTTCTTTTATCAAATGCCAAGGAACTCAAATTAGTGAGGTTGTCGAA
AAAGTTGTTCGGAGCGCAGTCAGAAAAGGTTATGCGGCCAAAGATATTCAAGTGCTCGCACCAATGTACCGCGGACCTGC
TGGGATTGACCATTTGAACAAAATTTTGCAAAATGTCCTTAATCCGAAAGGAAGCGGCAATAAACGAAAAGAAGTCACAT
TTGGGGATGTTTCATACCGGATTGGCGACAAGGTGCTTCAACTTGTTAATCAACCGGAGAAAAATGTGTTTAACGGAGAT
ATCGGGGAAATTATTTCGATTTTATACGCAAGAGAAAACGTAGAGAAGCAGGATATGATGATCGTTTCTTTTGAAGGAAC
AGAAGTCACGTATTATCGCCAGGACTTTAACCAAATCACCCATGCTTTTTGCTGTTCCATCCATAAATCGCAAGGAAGCG
AATTTCCCATTGTCATCCTTCCTGTCGTCAAAAGTTATTATCGCATGTTGCGAAGGAATTTATTATATACAGCGATTACC
CGAAGCAAAGAATTTCTGATTTTGTGCGGAGAGGAAGAAGCTTTTCGCATGGGCATTTCGAGGGTGGATGATCAGAAGAG
ACAAACGACTTTGTATGAAAAATTGGCGGCTTCCGCCAGCTTGCCGGTGGATAAAGATAAAACAATAGAACAAGCGGATT
TGTCTTTTGAAGAGAAGCTTTTTATGGTTGATCCCATGATCGGCATGGAAAATGTTACGCCTTATGATTTTCTTTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix containing domain (HHH_RecD2)

(158-249)

AAA domain (AAA_30)

(345-551)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(592-664)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(681-729)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

61.327

100

0.614

Multiple sequence alignment