Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   ACLIMI_RS12345 Genome accession   NZ_CP177045
Coordinates   2346787..2347083 (-) Length   98 a.a.
NCBI ID   WP_048350258.1    Uniprot ID   -
Organism   Bacillus licheniformis strain MPB11     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 2341787..2352083
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLIMI_RS12320 (ACLIMI_12320) - 2342064..2342537 (-) 474 WP_057957858.1 SMI1/KNR4 family protein -
  ACLIMI_RS12325 (ACLIMI_12325) - 2342578..2343000 (-) 423 WP_048350255.1 SMI1/KNR4 family protein -
  ACLIMI_RS12330 (ACLIMI_12330) - 2343205..2343654 (-) 450 WP_048350256.1 SMI1/KNR4 family protein -
  ACLIMI_RS12335 (ACLIMI_12335) - 2343651..2345582 (-) 1932 WP_411469478.1 T7SS effector LXG polymorphic toxin -
  ACLIMI_RS12340 (ACLIMI_12340) - 2345906..2346679 (-) 774 WP_048350257.1 acetoin reductase -
  ACLIMI_RS12345 (ACLIMI_12345) abrB 2346787..2347083 (-) 297 WP_048350258.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  ACLIMI_RS12350 (ACLIMI_12350) - 2347335..2348285 (-) 951 WP_373431793.1 methyl-accepting chemotaxis protein -
  ACLIMI_RS12355 (ACLIMI_12355) - 2348280..2349320 (-) 1041 Protein_2393 cache domain-containing protein -
  ACLIMI_RS12360 (ACLIMI_12360) - 2349672..2350361 (-) 690 WP_346805690.1 hypothetical protein -

Sequence

Protein


Download         Length: 98 a.a.        Molecular weight: 11158.30 Da        Isoelectric Point: 10.0629

>NTDB_id=969352 ACLIMI_RS12345 WP_048350258.1 2346787..2347083(-) (abrB) [Bacillus licheniformis strain MPB11]
MKTTGMIRKIDDVGRILLPKEMRRLLKINDGDPLEFIKDNDKIVLLKYQKHNTCIVTGKVSSQNMILSGGIVLSPEGARI
LLQDLLAERLKDEILRRC

Nucleotide


Download         Length: 297 bp        

>NTDB_id=969352 ACLIMI_RS12345 WP_048350258.1 2346787..2347083(-) (abrB) [Bacillus licheniformis strain MPB11]
ATGAAAACCACAGGAATGATTCGTAAAATAGATGATGTGGGACGAATTTTGTTACCAAAAGAAATGAGAAGGCTTTTAAA
GATTAATGATGGAGATCCATTGGAGTTTATTAAAGATAACGATAAAATTGTTTTGCTCAAGTATCAAAAGCATAACACTT
GTATCGTAACCGGAAAGGTGTCCTCTCAAAATATGATTTTATCAGGGGGAATTGTGTTAAGCCCTGAAGGGGCAAGAATC
TTGTTGCAAGATTTATTGGCCGAGCGATTAAAAGATGAAATTTTGAGAAGATGTTAA

Domains

Predicted by InterProScan.

AbrB C-terminal domain (AbrB_C)

(53-85)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(14-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

47.674

87.755

0.418