Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   ACLIMA_RS10175 Genome accession   NZ_CP177039
Coordinates   1958190..1958561 (+) Length   123 a.a.
NCBI ID   WP_017474791.1    Uniprot ID   -
Organism   Bacillus licheniformis strain MPB04     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1953190..1963561
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLIMA_RS10145 (ACLIMA_10145) - 1953618..1953851 (+) 234 WP_003182231.1 DUF896 domain-containing protein -
  ACLIMA_RS10150 (ACLIMA_10150) recP/tkt 1954018..1956021 (+) 2004 WP_009328229.1 transketolase Machinery gene
  ACLIMA_RS10155 (ACLIMA_10155) sirA 1956176..1956613 (+) 438 WP_003182234.1 sporulation inhibitor of replication protein SirA -
  ACLIMA_RS10160 (ACLIMA_10160) - 1956698..1956916 (+) 219 WP_003182236.1 YneF family protein -
  ACLIMA_RS10165 (ACLIMA_10165) - 1956997..1957158 (-) 162 WP_229107189.1 aspartyl-phosphate phosphatase Spo0E family protein -
  ACLIMA_RS10170 (ACLIMA_10170) - 1957401..1958108 (+) 708 WP_003182240.1 cytochrome c biogenesis protein CcdA -
  ACLIMA_RS10175 (ACLIMA_10175) pilH 1958190..1958561 (+) 372 WP_017474791.1 response regulator Machinery gene
  ACLIMA_RS10180 (ACLIMA_10180) - 1958635..1959129 (+) 495 WP_085959522.1 CcdC family protein -
  ACLIMA_RS10185 (ACLIMA_10185) - 1959165..1959593 (-) 429 WP_003182245.1 DUF2621 domain-containing protein -
  ACLIMA_RS10190 (ACLIMA_10190) - 1959798..1960205 (-) 408 WP_017474790.1 Hsp20/alpha crystallin family protein -
  ACLIMA_RS10195 (ACLIMA_10195) - 1960341..1960487 (-) 147 WP_003182250.1 small acid-soluble spore protein P -
  ACLIMA_RS10200 (ACLIMA_10200) sspO 1960529..1960675 (-) 147 WP_003182252.1 small acid-soluble spore protein O -

Sequence

Protein


Download         Length: 123 a.a.        Molecular weight: 13981.50 Da        Isoelectric Point: 4.5739

>NTDB_id=969200 ACLIMA_RS10175 WP_017474791.1 1958190..1958561(+) (pilH) [Bacillus licheniformis strain MPB04]
MTRVLIVDDAKFMRDKIREILETEDLQVAGEAENGEEAVLLYQELQPDLVIMDITMPVKNGIEALKDMIQLNPKVKVIMC
TAMRQKWIVVEVIEAGAKDFIVKPFEETKVVEAIRHVLGNACR

Nucleotide


Download         Length: 372 bp        

>NTDB_id=969200 ACLIMA_RS10175 WP_017474791.1 1958190..1958561(+) (pilH) [Bacillus licheniformis strain MPB04]
ATGACAAGGGTTTTAATTGTTGATGATGCAAAATTTATGAGAGATAAAATTAGAGAAATACTTGAAACAGAAGACTTGCA
AGTCGCGGGTGAAGCCGAGAACGGGGAAGAAGCTGTTTTGCTTTATCAAGAGCTGCAGCCGGACTTGGTTATCATGGATA
TTACGATGCCTGTGAAAAACGGGATAGAAGCTTTAAAGGATATGATCCAGCTGAACCCGAAAGTGAAAGTGATCATGTGT
ACGGCCATGCGGCAAAAGTGGATCGTCGTTGAGGTGATCGAAGCCGGAGCCAAGGACTTCATCGTCAAGCCTTTCGAGGA
AACGAAAGTCGTCGAAGCGATTCGGCATGTGCTCGGAAATGCTTGCAGATGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

36.585

100

0.366