Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   MHH52_RS14115 Genome accession   NZ_CP150276
Coordinates   2997423..2997578 (+) Length   51 a.a.
NCBI ID   WP_340009323.1    Uniprot ID   -
Organism   Paenibacillus sp. FSL K6-0276     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2992423..3002578
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MHH52_RS14090 (MHH52_14090) - 2994229..2994675 (-) 447 WP_340009314.1 OsmC family protein -
  MHH52_RS14095 (MHH52_14095) - 2994870..2995550 (+) 681 WP_340009316.1 SUMF1/EgtB/PvdO family nonheme iron enzyme -
  MHH52_RS14100 (MHH52_14100) - 2995821..2996144 (+) 324 WP_340009318.1 hypothetical protein -
  MHH52_RS14105 (MHH52_14105) - 2996179..2996607 (+) 429 WP_340009320.1 hypothetical protein -
  MHH52_RS14110 (MHH52_14110) - 2996662..2997426 (+) 765 WP_340009321.1 ABC transporter ATP-binding protein -
  MHH52_RS14115 (MHH52_14115) rcrQ 2997423..2997578 (+) 156 WP_340009323.1 hypothetical protein Regulator
  MHH52_RS14120 (MHH52_14120) - 2997756..3000287 (+) 2532 WP_340009325.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 51 a.a.        Molecular weight: 5643.44 Da        Isoelectric Point: 6.7168

>NTDB_id=969164 MHH52_RS14115 WP_340009323.1 2997423..2997578(+) (rcrQ) [Paenibacillus sp. FSL K6-0276]
MIAYRLSTIQGADHILVIQGGGIAEQGSHEQLLAMQGAYHELYNTQFKRAI

Nucleotide


Download         Length: 156 bp        

>NTDB_id=969164 MHH52_RS14115 WP_340009323.1 2997423..2997578(+) (rcrQ) [Paenibacillus sp. FSL K6-0276]
TTGATCGCCTATAGGCTCAGTACGATCCAGGGTGCTGATCACATACTCGTTATCCAGGGTGGAGGAATTGCCGAGCAAGG
TAGTCATGAGCAACTTCTTGCGATGCAGGGCGCCTATCACGAGCTATACAATACCCAGTTCAAACGGGCGATTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

56.863

100

0.569
  rcrP Streptococcus mutans UA159

42.857

96.078

0.412
  comA/nlmT Streptococcus mutans UA159

47.727

86.275

0.412

Multiple sequence alignment