Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   ACLIMA_RS05530 Genome accession   NZ_CP177039
Coordinates   1087096..1087836 (+) Length   246 a.a.
NCBI ID   WP_020450802.1    Uniprot ID   -
Organism   Bacillus licheniformis strain MPB04     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1082096..1092836
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLIMA_RS05495 (ACLIMA_05495) - 1082252..1082599 (+) 348 WP_003180252.1 YhaI family protein -
  ACLIMA_RS05500 (ACLIMA_05500) - 1082596..1083216 (-) 621 WP_003180254.1 HTH-type transcriptional regulator Hpr -
  ACLIMA_RS05505 (ACLIMA_05505) - 1083410..1083766 (-) 357 WP_003180256.1 YtxH domain-containing protein -
  ACLIMA_RS05510 (ACLIMA_05510) - 1083928..1084119 (+) 192 WP_003180258.1 hypothetical protein -
  ACLIMA_RS05515 (ACLIMA_05515) - 1084210..1084737 (-) 528 WP_003180260.1 tryptophan transporter -
  ACLIMA_RS05520 (ACLIMA_05520) serC 1084880..1085953 (-) 1074 WP_003180262.1 3-phosphoserine/phosphohydroxythreonine transaminase -
  ACLIMA_RS05525 (ACLIMA_05525) - 1086152..1086571 (-) 420 WP_003180263.1 HIT family protein -
  ACLIMA_RS05530 (ACLIMA_05530) pptA 1087096..1087836 (+) 741 WP_020450802.1 ABC transporter ATP-binding protein Regulator
  ACLIMA_RS05535 (ACLIMA_05535) - 1087829..1089052 (+) 1224 WP_017474239.1 ABC transporter permease -
  ACLIMA_RS05540 (ACLIMA_05540) - 1089105..1089815 (+) 711 WP_011197714.1 EcsC family protein -
  ACLIMA_RS05545 (ACLIMA_05545) - 1089836..1091008 (-) 1173 WP_162840067.1 M20 family metallopeptidase -
  ACLIMA_RS05550 (ACLIMA_05550) - 1091150..1092523 (-) 1374 WP_011197716.1 hypothetical protein -

Sequence

Protein


Download         Length: 246 a.a.        Molecular weight: 28069.46 Da        Isoelectric Point: 4.8782

>NTDB_id=969154 ACLIMA_RS05530 WP_020450802.1 1087096..1087836(+) (pptA) [Bacillus licheniformis strain MPB04]
MSLLTVNELTGGYTRNPVLRDVSFAIEREQIVGLIGLNGAGKSTTIRHIIGLMEPHKGSVELNGKTFMDDPESYRSQFTF
IPETPILYEELTLKEHLELTAMAYGLSKETFEKRLPPLLKEFRMEKRLKWFPAHFSKGMKQKVMIMCAFLVEPDLYIIDE
PFLGLDPLAINALLERMNEAKKNGAAVLMSTHILATAERYCDSFIILHNGEVRAKGTLDELREQFSMEEASLDDLYLELT
KEESYE

Nucleotide


Download         Length: 741 bp        

>NTDB_id=969154 ACLIMA_RS05530 WP_020450802.1 1087096..1087836(+) (pptA) [Bacillus licheniformis strain MPB04]
ATGTCACTACTGACTGTTAATGAGTTAACTGGAGGGTATACAAGAAACCCGGTGCTGCGCGATGTTTCATTTGCGATTGA
ACGGGAGCAGATCGTCGGGCTGATCGGTTTGAACGGAGCGGGGAAAAGCACGACGATCCGGCATATCATCGGCTTAATGG
AACCGCACAAAGGATCGGTTGAATTGAACGGCAAAACGTTCATGGACGATCCGGAAAGCTATCGTTCCCAATTTACGTTT
ATTCCGGAAACGCCGATTTTATATGAAGAGCTGACATTGAAGGAGCATTTGGAGCTGACGGCGATGGCGTACGGCCTTTC
GAAGGAAACGTTCGAGAAAAGGCTTCCGCCGCTTTTGAAAGAATTCAGAATGGAGAAGCGCCTGAAATGGTTCCCTGCCC
ATTTTTCAAAAGGTATGAAGCAGAAGGTTATGATCATGTGCGCTTTCCTTGTCGAACCCGACCTGTACATTATAGACGAA
CCGTTTCTCGGTCTTGATCCGCTGGCGATCAATGCCCTTCTCGAGCGGATGAACGAAGCGAAGAAAAACGGCGCGGCCGT
TTTGATGTCGACGCATATTTTGGCAACGGCAGAGCGGTATTGCGACTCCTTCATTATTCTCCATAACGGCGAAGTGCGGG
CGAAAGGAACGCTTGATGAGCTCAGAGAGCAGTTTTCGATGGAAGAAGCGAGCCTCGACGACCTGTATCTTGAACTGACG
AAGGAAGAGAGCTATGAATAG

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(19-162)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

57.261

97.967

0.561
  pptA Streptococcus thermophilus LMD-9

56.846

97.967

0.557