Detailed information    

insolico Bioinformatically predicted

Overview

Name   lrpC   Type   Machinery gene
Locus tag   ACLIMA_RS02625 Genome accession   NZ_CP177039
Coordinates   525197..525625 (+) Length   142 a.a.
NCBI ID   WP_185855252.1    Uniprot ID   -
Organism   Bacillus licheniformis strain MPB04     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 520197..530625
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLIMA_RS02590 (ACLIMA_02590) - 520481..520984 (+) 504 WP_003179036.1 D-lyxose/D-mannose family sugar isomerase -
  ACLIMA_RS02595 (ACLIMA_02595) - 521001..521384 (-) 384 WP_003179038.1 DUF2283 domain-containing protein -
  ACLIMA_RS02600 (ACLIMA_02600) - 521470..521892 (+) 423 WP_003179040.1 pyridoxamine 5'-phosphate oxidase family protein -
  ACLIMA_RS02605 (ACLIMA_02605) - 522345..523154 (+) 810 WP_003179042.1 lipid II flippase Amj family protein -
  ACLIMA_RS02610 (ACLIMA_02610) - 523319..524260 (+) 942 WP_003179044.1 LCP family protein -
  ACLIMA_RS02615 (ACLIMA_02615) - 524292..524585 (-) 294 WP_003179046.1 DUF3817 domain-containing protein -
  ACLIMA_RS02620 (ACLIMA_02620) - 524669..525079 (-) 411 WP_003179047.1 carboxymuconolactone decarboxylase family protein -
  ACLIMA_RS02625 (ACLIMA_02625) lrpC 525197..525625 (+) 429 WP_185855252.1 Lrp/AsnC family transcriptional regulator Machinery gene
  ACLIMA_RS02630 (ACLIMA_02630) - 525699..527882 (+) 2184 WP_025805960.1 DNA topoisomerase III -
  ACLIMA_RS02635 (ACLIMA_02635) - 528570..530390 (+) 1821 WP_011197562.1 APC family permease -

Sequence

Protein


Download         Length: 142 a.a.        Molecular weight: 16252.83 Da        Isoelectric Point: 7.7014

>NTDB_id=969144 ACLIMA_RS02625 WP_185855252.1 525197..525625(+) (lrpC) [Bacillus licheniformis strain MPB04]
MKIDDLDFKIIAELKKDSRLSMRELGRKISLSAPSVTERVRRLESFGVIKKYTTDIDYQKVGLPVSCIIEATVKNGEYER
FKAYIERLPNIEFCYRIAGAACYMLKINAESLAKIEAFINETSPYAQTVTHVIFSEIETKES

Nucleotide


Download         Length: 429 bp        

>NTDB_id=969144 ACLIMA_RS02625 WP_185855252.1 525197..525625(+) (lrpC) [Bacillus licheniformis strain MPB04]
ATGAAAATTGATGATCTCGATTTTAAAATCATAGCCGAATTAAAGAAAGACAGCCGTTTATCGATGCGGGAGCTGGGCAG
GAAGATCAGCCTTTCGGCACCGTCTGTGACCGAAAGAGTCAGGCGGCTCGAATCGTTCGGCGTCATAAAAAAATATACGA
CTGACATCGATTACCAAAAGGTCGGTCTTCCCGTTTCCTGCATCATTGAAGCAACGGTGAAAAACGGGGAATACGAGAGG
TTTAAAGCGTATATCGAACGCCTCCCGAACATTGAATTCTGCTACCGGATCGCGGGAGCTGCCTGCTATATGCTGAAAAT
CAATGCAGAGAGCCTGGCGAAGATCGAAGCGTTTATCAATGAAACGTCTCCATATGCCCAAACCGTGACACACGTGATTT
TTTCGGAAATTGAAACAAAGGAATCGTGA

Domains

Predicted by InterProScan.

Lrp/AsnC ligand binding domain (AsnC_trans_reg)

(70-135)

AsnC-type helix-turn-helix domain (HTH_AsnC-type)

(3-44)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lrpC Bacillus subtilis subsp. subtilis str. 168

79.286

98.592

0.782