Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   MHH79_RS14295 Genome accession   NZ_CP150275
Coordinates   2727498..2728244 (-) Length   248 a.a.
NCBI ID   WP_340034672.1    Uniprot ID   -
Organism   Bacillus sp. FSL K6-0993     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2722498..2733244
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MHH79_RS14270 (MHH79_14270) mreC 2722904..2723776 (-) 873 WP_003222609.1 rod shape-determining protein MreC -
  MHH79_RS14275 (MHH79_14275) mreB 2723807..2724820 (-) 1014 WP_003229650.1 cell shape-determining protein MreB -
  MHH79_RS14280 (MHH79_14280) radC 2724912..2725607 (-) 696 WP_014480455.1 DNA repair protein RadC -
  MHH79_RS14285 (MHH79_14285) - 2725644..2726213 (-) 570 WP_004398496.1 Maf family nucleotide pyrophosphatase -
  MHH79_RS14290 (MHH79_14290) spoIIB 2726366..2727364 (-) 999 WP_063335537.1 stage II sporulation protein SpoIIB -
  MHH79_RS14295 (MHH79_14295) comC 2727498..2728244 (-) 747 WP_340034672.1 A24 family peptidase Machinery gene
  MHH79_RS14300 (MHH79_14300) - 2728384..2729676 (-) 1293 WP_063335539.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  MHH79_RS14305 (MHH79_14305) valS 2729736..2732378 (-) 2643 WP_017697542.1 valine--tRNA ligase -
  MHH79_RS14310 (MHH79_14310) - 2732826..2733017 (+) 192 WP_003222590.1 hypothetical protein -

Sequence

Protein


Download         Length: 248 a.a.        Molecular weight: 26414.92 Da        Isoelectric Point: 9.7944

>NTDB_id=969126 MHH79_RS14295 WP_340034672.1 2727498..2728244(-) (comC) [Bacillus sp. FSL K6-0993]
MLSILFIFGLILGSFYYTAGCRIPLHLSIITPRSSCPFCRRTLTSAELIPILSFLFQKGKCKSCGHRISFMYPAAELVSA
CLFAAAGIRFGTSLELFPAVVFISLLIIVAVTDIHFMLIPNRILIFFLPFLAAARVISPLDSWYAGLLGAAAGFLFLAVI
AAITHGGVGGGDIKLFAVIGFVLGVKMLAAAFFFSVLIGALYGAAAVLTGRLAKRQPLPFAPAIAAGSILAYLYGDSIIS
FYIKMALG

Nucleotide


Download         Length: 747 bp        

>NTDB_id=969126 MHH79_RS14295 WP_340034672.1 2727498..2728244(-) (comC) [Bacillus sp. FSL K6-0993]
ATGCTATCCATTCTTTTTATCTTCGGGCTTATCCTTGGTTCTTTTTACTATACGGCCGGGTGCCGTATCCCCTTACATCT
ATCTATTATTACGCCCCGTTCATCATGCCCGTTTTGCCGGCGGACATTAACTTCTGCAGAATTAATTCCCATCCTGTCAT
TCCTATTTCAAAAAGGTAAATGTAAAAGCTGCGGGCATAGAATTTCTTTTATGTATCCCGCAGCAGAGCTTGTGTCAGCG
TGTTTATTTGCCGCCGCAGGAATACGCTTTGGCACGTCGCTGGAACTGTTTCCCGCTGTGGTGTTTATCTCTCTTCTCAT
TATTGTTGCAGTGACAGATATTCATTTTATGCTGATTCCAAACCGAATATTGATTTTCTTTCTTCCCTTTTTGGCGGCCG
CGAGAGTGATTTCTCCGCTTGATTCCTGGTATGCAGGCCTGTTAGGTGCGGCAGCCGGATTTCTATTTCTGGCTGTAATT
GCCGCAATCACCCATGGGGGAGTAGGGGGAGGAGATATTAAATTATTTGCGGTGATTGGCTTTGTGCTTGGTGTGAAGAT
GCTGGCAGCTGCCTTTTTCTTTTCTGTTTTGATAGGTGCATTATATGGAGCGGCAGCTGTTCTGACTGGTAGACTCGCTA
AAAGGCAGCCGCTTCCCTTCGCCCCCGCTATAGCCGCAGGGAGCATTTTAGCCTATTTATACGGTGACTCTATCATTTCT
TTTTATATCAAAATGGCATTGGGCTGA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(101-203)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(7-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

97.984

100

0.98

Multiple sequence alignment